PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LSD
Protein Properties Length: 155aa    MW: 15820.4 Da    PI: 7.9227
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.11.6e-143761125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL+YP+GA+sV+Ca+C++V
  Csa14g042550.1 37 CSGCRNLLMYPAGASSVCCAVCNAV 61
                    ************************9 PP

2zf-LSD144.23e-1476100125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C gC+tlL+Y rGA+sV+C++C+tV
  Csa14g042550.1  76 CAGCHTLLMYIRGATSVQCSCCHTV 100
                     ************************9 PP

3zf-LSD141.71.9e-13114138125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  Csa14g042550.1 114 CGNCRMLLMYQYGARSVKCAVCNFV 138
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.2E-143464IPR005735Zinc finger, LSD1-type
PfamPF069437.5E-123761IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.07E-537135IPR011031Multihaem cytochrome
TIGRFAMsTIGR010535.2E-1473102IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1176100IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-12111141IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12114138IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPAMAPSY TPPPAHGSTS GQSQLVCSGC RNLLMYPAGA SSVCCAVCNA  60
VTAVPPPGTE MAQLVCAGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRML  120
LMYQYGARSV KCAVCNFVTS VGASASTSDA KFNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0576751e-158AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY1169511e-158AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY3496181e-158AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461077.11e-107PREDICTED: protein LOL1
RefseqXP_010461078.11e-107PREDICTED: protein LOL1
SwissprotQ93ZB14e-87LOL1_ARATH; Protein LOL1
TrEMBLR0IDJ32e-94R0IDJ3_9BRAS; Uncharacterized protein
STRINGXP_010461077.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]