PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g042550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LSD | ||||||||
Protein Properties | Length: 155aa MW: 15820.4 Da PI: 7.9227 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.1 | 1.6e-14 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C++V Csa14g042550.1 37 CSGCRNLLMYPAGASSVCCAVCNAV 61 ************************9 PP | |||||||
2 | zf-LSD1 | 44.2 | 3e-14 | 76 | 100 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV Csa14g042550.1 76 CAGCHTLLMYIRGATSVQCSCCHTV 100 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Csa14g042550.1 114 CGNCRMLLMYQYGARSVKCAVCNFV 138 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.2E-14 | 34 | 64 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.5E-12 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.07E-5 | 37 | 135 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 5.2E-14 | 73 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 76 | 100 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.4E-12 | 111 | 141 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 114 | 138 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MPVPLAPYPT PPAPAMAPSY TPPPAHGSTS GQSQLVCSGC RNLLMYPAGA SSVCCAVCNA 60 VTAVPPPGTE MAQLVCAGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRML 120 LMYQYGARSV KCAVCNFVTS VGASASTSDA KFNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g042550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057675 | 1e-158 | AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY116951 | 1e-158 | AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY349618 | 1e-158 | AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461077.1 | 1e-107 | PREDICTED: protein LOL1 | ||||
Refseq | XP_010461078.1 | 1e-107 | PREDICTED: protein LOL1 | ||||
Swissprot | Q93ZB1 | 4e-87 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | R0IDJ3 | 2e-94 | R0IDJ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461077.1 | 1e-106 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-67 | lsd one like 1 |
Publications ? help Back to Top | |||
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