PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g041570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 341aa MW: 38574.6 Da PI: 5.9154

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g041570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.8	4.3e-11	10	50	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ tf +R++gi KK +E +LC+++++ +i s+ Csa14g041570.1 10 IANNYLRKQTFKRRKAGIEKKLHEFTTLCGVKACAVICSPY 50 889999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.386	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-8	1	58	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.10E-22	1	79	No hit	No description
SuperFamily	SSF55455	5.49E-20	2	92	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-11	10	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MRSKLKLSLI ANNYLRKQTF KRRKAGIEKK LHEFTTLCGV KACAVICSPY ENPVLWPSAE 60 GVQEVVSKVM ELPVEDQCKY MFNHETYLRR EITKAEKQVE KLRSDNRETQ LRQFMFDCLE 120 GKMNQHPYDA TDLQDLRSYI GSYIKKLDFR MKVLTEENGE SSSSTLLLPS SVAGADSPAV 180 EVTGHPVVAD ASMVTELNGF YGYFPYDGMT MNPIPNQHES LVQHHVPVDS VQHHVPVGSV 240 EYHTPMNFDD QIQHGIYDMN LHQDMSLDPN QYPYQQGSFM NLLLGHPQEM GYDGEHAHIP 300 FVNGNYHQLP TMDFATTGHM PSINTNTIAG VYAPDDINAL *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g041570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460983.1	0.0	PREDICTED: agamous-like MADS-box protein AGL86
Swissprot	Q9C6V3	1e-100	AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBL	S6BCF0	1e-116	S6BCF0_CRUWA; Agamous-like MADS-box protein AGL92 (Fragment)
STRING	XP_010460983.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	4e-99	AGAMOUS-like 86

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]