PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g038450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 238aa    MW: 27321.8 Da    PI: 5.5475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g038450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.3e-07157201655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Csa14g038450.1 157 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 201
                     6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.392151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-10152211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-10154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-8157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-5157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDCLSYFSPT SDIIQLQDCF VPETDTFFFQ AQPQHQLHQP LHLEEALSPP LCEFSHFYEP  60
FLPPQDIFLP SPKTEVFNES QDLDAFFPTP KHQKLINSSF HFNTNEPLFP PNPNILDSYI  120
TETSNFSEFL VPDFSPAFKV GWSDKGDTKK PELSAQSIAA RKRRRRITEK THELGKLIPG  180
SQKHNTAEMF HAAAKYVKFL QAQIEILQLN QTNMQTRESS KVGREMQFLL ASQEIQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164RKRRR
2161166KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g038450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478497.11e-147PREDICTED: transcription factor bHLH52-like
SwissprotQ9SA821e-104BH052_ARATH; Transcription factor bHLH52
TrEMBLR0INR81e-131R0INR8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010478497.11e-147(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]