PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g038230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92246.5 Da PI: 6.4595 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Csa14g038230.1 20 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 78 5678*****************************************************97 PP | |||||||
2 | START | 175.2 | 4.2e-55 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +etl+vi +g g+++l Csa14g038230.1 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPM-KVAEILKDRPSWFRDCRCVETLNVIPTGsgGTIELV 262 7899******************************************************.8888888888************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ sss+vRa++l Sg+li+p+++g+s +++v+hvdl+ ++++++lr+l+ Csa14g038230.1 263 NTQIYAPTTLAAaRDFWTLRYSTSLEDGSYVVCERSLTSATGGPNgplSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDVSSVPEVLRPLY 357 ********************************************99************************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + ++k++va+l++ ++ Csa14g038230.1 358 ESSKILAQKMTVAALRHVRQ 377 ***************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.451 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 19 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.82E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-19 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.21E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 25.657 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 1.85E-70 | 163 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-19 | 166 | 373 | IPR023393 | START-like domain |
SMART | SM00234 | 5.3E-52 | 168 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.06E-34 | 168 | 380 | No hit | No description |
Pfam | PF01852 | 2.4E-52 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 9.6E-50 | 693 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MMAHSMDDRD SPDKGFDSGK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILCNI 60 EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGFM 120 KHRIHTASGT TTDNSCESVV VSGQQRQQQN PTHQHPQRDA NNPANLLSIA EETLAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGIAARACGL VSLEPMKVAE ILKDRPSWFR 240 DCRCVETLNV IPTGSGGTIE LVNTQIYAPT TLAAARDFWT LRYSTSLEDG SYVVCERSLT 300 SATGGPNGPL SSSFVRAKML SSGFLIRPCD GGGSIIHIVD HVDLDVSSVP EVLRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQYSG GRQPAVLRTF SQRLCRGFND AVNGFADDGW 420 SPMSSDGAED ITIMINSSSA KFAGSQYGSS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL 480 REHRAEWADY GVDAYSAASL RATPFAVPCV RTGGFPSNQV ILPLAQTLEH EEFIEVVRLG 540 GHAYSPEDMG LSRDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL 600 EQKVNPNDHQ SASRTRDLAS SLDGSTKTDS ETNSRLVLTI AFQFTYDNHS RDNVATMARQ 660 YVRNVVGSIQ RVALAITPRP GSMQFPTSPE ALTLVRWITR SYSAHTGADL FGTDSQSCGG 720 DTLLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML DKTLDDSGRK 780 ALCSEFAKIM QQGYANLPAG ICVSSMGRPV SYEQATVWKV VDDNESNHCL AFILVNWSFV 840 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00170 | DAP | Transfer from AT1G30490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g038230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ440967 | 0.0 | AJ440967.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (hb9 gene). | |||
GenBank | AK226570 | 0.0 | AK226570.1 Arabidopsis thaliana mRNA for HD-Zip protein, complete cds, clone: RAFL07-12-P11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460847.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-9 | ||||
Swissprot | O04292 | 0.0 | ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9 | ||||
TrEMBL | D7KFK4 | 0.0 | D7KFK4_ARALL; Uncharacterized protein | ||||
STRING | XP_010460847.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30490.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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