PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g037510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 332aa    MW: 37072.2 Da    PI: 8.8507
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g037510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-12164213150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                     k+ie +  r v +skRrngi  K +EL +LC+a  a + +s +gk y++ 
  Csa14g037510.1 164 KKIEKDEDRLVALSKRRNGIYTKLSELAILCGAHFAFLGYSASGKPYTFG 213
                     689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR022272.2E-1528105IPR000223Peptidase S26A, signal peptidase I
PRINTSPR007278.9E-113551IPR000223Peptidase S26A, signal peptidase I
SuperFamilySSF513061.05E-3536154IPR015927Peptidase S24/S26A/S26B/S26C
Gene3DG3DSA:2.10.109.101.2E-2843156IPR028360Peptidase S24/S26, beta-ribbon domain
CDDcd065307.14E-2844150No hitNo description
PfamPF007174.8E-1044111IPR019759Peptidase S24/S26A/S26B
PRINTSPR007278.9E-1188100IPR000223Peptidase S26A, signal peptidase I
PRINTSPR007278.9E-11117136IPR000223Peptidase S26A, signal peptidase I
SuperFamilySSF554553.27E-19156226IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-16156215IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.156156216IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-12158178IPR002100Transcription factor, MADS-box
PfamPF003194.7E-15165212IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-12178193IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-12193214IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0008236Molecular Functionserine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASPSSFWSI ASRQAMNSGL FLTKLYCFLH VTTNYLGFMA YAYGPSMTPT LHPSGSVLLA  60
ERISKRYQKP SRGDIVVIRS PENPNKTPIK RVIGVEGDCI SFVADPVKSD KSQTIVVPKG  120
HVFVQGDYTH NSRDSRTFGP VPYGLIQGRV LWRKTKGKQR IKIKKIEKDE DRLVALSKRR  180
NGIYTKLSEL AILCGAHFAF LGYSASGKPY TFGSPSFQAV VERFLNGEAS SSSSSSLQRS  240
FFDAHHKAKI QELCELYNSL VDKAREEEAE EMKAAASVEP LPEDAWWKVD PMAVTDEEER  300
KQLLEKFEGL YEKLCDEVDV RNQRGDAAAE N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g037510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0211201e-152BT021120.1 Arabidopsis thaliana At1g23470 gene, complete cds.
GenBankBT0293261e-152BT029326.1 Arabidopsis thaliana At1g23465 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460774.11e-127PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLQ9C8S31e-166Q9C8S3_ARATH; Uncharacterized protein T1P2.16
STRINGXP_010460774.11e-126(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-66AGAMOUS-like 64