PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g036100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1730aa MW: 194428 Da PI: 5.0131

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g036100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	45	100	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ +++yps+++r++L++kl+Lt+rq ++WF+ rR k+kk Csa14g036100.1 45 PKRQMKTPFQLETLEKVYSEEKYPSEATRADLSDKLNLTDRQLQMWFCHRRLKDKK 100 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-19	21	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.4E-16	36	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	41	101	IPR001356	Homeobox domain
SMART	SM00389	5.0E-18	43	105	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-17	45	100	IPR001356	Homeobox domain
CDD	cd00086	1.58E-14	46	100	No hit	No description
SMART	SM00571	4.6E-24	563	622	IPR018501	DDT domain
PROSITE profile	PS50827	18.031	563	622	IPR018501	DDT domain
Pfam	PF02791	9.4E-18	564	619	IPR018501	DDT domain
Pfam	PF05066	9.1E-16	745	812	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.1E-7	945	986	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-13	1121	1193	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1730 aa Download sequence Send to blast
MEMGSDEEED HQIRSVADVV GGGGGSSNNK KKNKIDNSSS SSAKPKRQMK TPFQLETLEK 60 VYSEEKYPSE ATRADLSDKL NLTDRQLQMW FCHRRLKDKK DDQSQSKTPP VKPAVPPVRP 120 PPPALASSVH DLPPARSVPE QDSGSGSDSG SGCSPYSDSR RNFASGSSSS RAELDEYETT 180 MGKPSYEPRL SAMVRRAIVC IEAQLGEPLR DDGPILGMEF DPLPPGAFGT PIAMQKHLLH 240 PYESKMYEPH DVRPRRSQAA ARSFHEQQSL DDPSSFTPEM YGRYSENHAH GMDYEIARPR 300 SSSFMHENGS LPRSYGTPGY VSRNCSTSQQ DMPSPIVASA HRGDRFLMEK DSSVLRTEDP 360 YMLSDGVRKS NDVHRKGKIH DVRLGRGSET RENRGPKDLE KLEIQKKKNE ERMRKEMERN 420 ERERRKEEER LMRERIKEEE RLQREQRREM ERREKFLQRE NERAEKKKQK EEIRREKDAI 480 RRKIAIEKAT ARRIAKESMD LIEDEQLELM DLAAINKGLP SVLQLDHDTL QNLELYRDSL 540 STFPPKGLQL KMPFTISPWK DSDESVGNLL MVWRFLTSFS DVLDLWPFTL DEFIQAFHDY 600 DSRLLGEIHV TLLRSIIRDI EDVARTPFSG IGNNQYTTAN PEGGHPQIVE GAYAWGFDIR 660 SWKKNLNPLT WPEILRQLGL STGLGPRLKK KNSRLTHTGD KDEAKGCEDI ISTIRSGSAA 720 ESAFALMREK GLLAPRKSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL 780 TTSKTPEASI SVALTRDVKL FERIAPSTYC VRAPYVKDPA DGKAILADAR KKIRAFESGL 840 TGPEDVNDLE RDEDFEIDID EDPEVDDLAT LASASKGADL GEANVFSGKG GDTMFCDVKA 900 GVKSEIEKEF SSPPPSSIKS IVPQHNERLK DTAVGCLDAM VDESNEGQSW IQGLTEGDYC 960 HLSVEERLNA LVALVGIANE GNSIRSGLED RMEAANSLKK QMWAEAQLDN SCMRDVLKLD 1020 FQNLASSKTE STTGLPIIQS ANRERDNFGG DPSELLDETK PLEVVSNDLQ KSTAERGLII 1080 NQEANISQEN CSFQQGYASK RSRSQLKSYI GHKAEEVYPY RSLPVGQDRR HNRYWLFAAS 1140 ASKSDPSSGL LFVELHDGKW LLIDSEEAFD TLVASLDMRG IRESHLRIML QKIEGSFKEN 1200 ARKNMKLARN PFLKEKSVMN HSPSDSVSPS SAVSGSNSDS METSNSIRVE LGRNDTEKKS 1260 LSKRFHDFQR WMWTETYSSL PSCAKKYGKK RSELLATCAL CFASYLSEYT HCTSCHQRSD 1320 MVDGSEILDS GLTVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDKRK MWGFRLNASS 1380 SPEELLQVLT SLESAIKKEY LSSNFMSAKE LLGVGDANVD DPGSVDVLPW IPKTVSAVAL 1440 RLSELDASII YVKPEKPDLI PEDENEQISL FPGDSLFKGK GPREQEDKDE VVPNLGNRRS 1500 NKRARVSLGS GSNKKVKRKK AQGGPNRFVV SRRNVAVDNN LMSMELNHQV PGRGKRTVRK 1560 RPERINEDND HIVNRMADIV RPKSQEVEED EEEEEQTFRD IDEDWAAGET PREMDDDWAN 1620 ETPNRMMTPM QVDDESDNSV GVESEDDDVD GQFVDYSQRN KWGLDWNSNP NEAAMEDEEE 1680 EEVVGVERVE GEDDAEMSES SEDDDDVPAN NAANNYDRES EGGYSSSDS*

Sequence ? help Back to Top

Protein Sequence Length: 1730 aa Download sequence Send to blast

MEMGSDEEED HQIRSVADVV GGGGGSSNNK KKNKIDNSSS SSAKPKRQMK TPFQLETLEK  60
VYSEEKYPSE ATRADLSDKL NLTDRQLQMW FCHRRLKDKK DDQSQSKTPP VKPAVPPVRP  120
PPPALASSVH DLPPARSVPE QDSGSGSDSG SGCSPYSDSR RNFASGSSSS RAELDEYETT  180
MGKPSYEPRL SAMVRRAIVC IEAQLGEPLR DDGPILGMEF DPLPPGAFGT PIAMQKHLLH  240
PYESKMYEPH DVRPRRSQAA ARSFHEQQSL DDPSSFTPEM YGRYSENHAH GMDYEIARPR  300
SSSFMHENGS LPRSYGTPGY VSRNCSTSQQ DMPSPIVASA HRGDRFLMEK DSSVLRTEDP  360
YMLSDGVRKS NDVHRKGKIH DVRLGRGSET RENRGPKDLE KLEIQKKKNE ERMRKEMERN  420
ERERRKEEER LMRERIKEEE RLQREQRREM ERREKFLQRE NERAEKKKQK EEIRREKDAI  480
RRKIAIEKAT ARRIAKESMD LIEDEQLELM DLAAINKGLP SVLQLDHDTL QNLELYRDSL  540
STFPPKGLQL KMPFTISPWK DSDESVGNLL MVWRFLTSFS DVLDLWPFTL DEFIQAFHDY  600
DSRLLGEIHV TLLRSIIRDI EDVARTPFSG IGNNQYTTAN PEGGHPQIVE GAYAWGFDIR  660
SWKKNLNPLT WPEILRQLGL STGLGPRLKK KNSRLTHTGD KDEAKGCEDI ISTIRSGSAA  720
ESAFALMREK GLLAPRKSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL  780
TTSKTPEASI SVALTRDVKL FERIAPSTYC VRAPYVKDPA DGKAILADAR KKIRAFESGL  840
TGPEDVNDLE RDEDFEIDID EDPEVDDLAT LASASKGADL GEANVFSGKG GDTMFCDVKA  900
GVKSEIEKEF SSPPPSSIKS IVPQHNERLK DTAVGCLDAM VDESNEGQSW IQGLTEGDYC  960
HLSVEERLNA LVALVGIANE GNSIRSGLED RMEAANSLKK QMWAEAQLDN SCMRDVLKLD  1020
FQNLASSKTE STTGLPIIQS ANRERDNFGG DPSELLDETK PLEVVSNDLQ KSTAERGLII  1080
NQEANISQEN CSFQQGYASK RSRSQLKSYI GHKAEEVYPY RSLPVGQDRR HNRYWLFAAS  1140
ASKSDPSSGL LFVELHDGKW LLIDSEEAFD TLVASLDMRG IRESHLRIML QKIEGSFKEN  1200
ARKNMKLARN PFLKEKSVMN HSPSDSVSPS SAVSGSNSDS METSNSIRVE LGRNDTEKKS  1260
LSKRFHDFQR WMWTETYSSL PSCAKKYGKK RSELLATCAL CFASYLSEYT HCTSCHQRSD  1320
MVDGSEILDS GLTVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDKRK MWGFRLNASS  1380
SPEELLQVLT SLESAIKKEY LSSNFMSAKE LLGVGDANVD DPGSVDVLPW IPKTVSAVAL  1440
RLSELDASII YVKPEKPDLI PEDENEQISL FPGDSLFKGK GPREQEDKDE VVPNLGNRRS  1500
NKRARVSLGS GSNKKVKRKK AQGGPNRFVV SRRNVAVDNN LMSMELNHQV PGRGKRTVRK  1560
RPERINEDND HIVNRMADIV RPKSQEVEED EEEEEQTFRD IDEDWAAGET PREMDDDWAN  1620
ETPNRMMTPM QVDDESDNSV GVESEDDDVD GQFVDYSQRN KWGLDWNSNP NEAAMEDEEE  1680
EEVVGVERVE GEDDAEMSES SEDDDDVPAN NAANNYDRES EGGYSSSDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g036100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460638.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	D7KCW8	0.0	D7KCW8_ARALL; HB-1
STRING	XP_010460638.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1