PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g036010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 18813.8 Da PI: 9.8224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ + r++lg+++t+e+Aa+a+++ + +++g Csa14g036010.1 19 RYRGVRKRP-WGRYAAEIRDpFK----KSRVWLGTYDTPEDAARAYDKRAIEFRG 68 6********.**********662....5********************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.525 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-22 | 19 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-12 | 19 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-35 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.88E-31 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTPTVKTAAV KTNDGNGVRY RGVRKRPWGR YAAEIRDPFK KSRVWLGTYD TPEDAARAYD 60 KRAIEFRGAK AKTNFPYYNN NNNSNESLSL SHSTVESSVP DLNNRGSDSI SSRFPFPKIQ 120 VKSGMMVFDE RSESESSSSV VMDLSSEGGG GRRVVLDLDL NFPPPPDQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 17 | 81 | 3 | 68 | ATERF1 |
3gcc_A | 7e-21 | 17 | 81 | 3 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00164 | DAP | Transfer from AT1G28370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g036010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460625.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
Swissprot | Q9C5I3 | 1e-77 | ERF76_ARATH; Ethylene-responsive transcription factor 11 | ||||
TrEMBL | R0IGP4 | 2e-85 | R0IGP4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010460625.1 | 1e-121 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-62 | ERF domain protein 11 |
Publications ? help Back to Top | |||
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