PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g034100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 276aa    MW: 31878.2 Da    PI: 4.8363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g034100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-071848131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +g+WT eEd ll +++   G g+W++ a+  
   Csa14g034100.1 18 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSS 48
                     79************************99875 PP

2Myb_DNA-binding52.51.1e-1662105146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa14g034100.1  62 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 105
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0851351IPR017877Myb-like domain
SuperFamilySSF466896.53E-2416103IPR009057Homeodomain-like
SMARTSM007175.4E-41758IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-121963IPR009057Homeodomain-like
PROSITE profilePS5129426.01557111IPR017930Myb domain
SMARTSM007172.6E-1561109IPR001005SANT/Myb domain
PfamPF002499.4E-1662105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2364110IPR009057Homeodomain-like
CDDcd001671.13E-1166105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSNIMRCNGN EEGAEQRKGP WTLEEDTLLT NYISHNGEGR WNLLAKSSEX RWLNYLKPDI  60
KRGNLTPQEQ LLILELHSKW GNRWSKIAKY LPGRTDNDIK NYWRTRVQKQ ARQLNIDSNS  120
HKFLEVVRSF WVPRLIHKMK DNSNTNTKAT PPDLLGPVLQ DNNFSPDYSN MDFSTSMSVD  180
LKKISQFMES SDIETTCSFY LDGSRGSSSS QCVSEDYSSF PCLEEEYMVA TMGNSDISAL  240
QDCHVADSTY EDDVTQDPMW NMDDIWQFKE YAHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20181117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g034100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348150.0AF334815.2 Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds.
GenBankAY5195580.0AY519558.1 Arabidopsis thaliana MYB transcription factor (At1g25340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091251.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G71e-94MYB62_ARATH; Transcription factor MYB62
TrEMBLR0GKF71e-177R0GKF7_9BRAS; Uncharacterized protein
STRINGXP_010499121.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.21e-155myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]