PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g032500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 388aa MW: 42947.8 Da PI: 5.4848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g032500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	228	276	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa14g032500.1 228 NSHSLAERIRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 276 58***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-16	223	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.18E-11	223	280	No hit	No description
PROSITE profile	PS50888	15.453	225	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-15	226	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	228	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-9	231	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDMSDKDEFA AKKRDLDWRI SDSNNPMSAP SQIMDSSFRQ NLWDDGGFNV HTDAGTSFRG 60 NVDRPLEMGG WNMAQFPADS GFIERAAKFS FFGCGSFGEL MMMNQHSNGL FVQDTQKNQI 120 GVATGSKQVD GPVKVVKENG SSNVSEDSQS SGGNNGHDDA KCMEISSKVF NAKKRKRTGK 180 DSEQEDKKEK DEQSPNSNAN KTNSGKQASD PVKDGYIHMR ARRGQATNSH SLAERIRREK 240 ISERMKFLQD LVPGCDKVTG KAVMLDEIIN YVQSLQCQIE FLSMKLSAVN PVLDFNLESL 300 LAKDALQVPA PTFPQDMSML YPPLPYFSQK GFMQPNLSSM STLNGGLKRQ ETHGYESDQH 360 NVVQMNPETS TAPDHEKDTT ANTEVEP*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDMSDKDEFA AKKRDLDWRI SDSNNPMSAP SQIMDSSFRQ NLWDDGGFNV HTDAGTSFRG  60
NVDRPLEMGG WNMAQFPADS GFIERAAKFS FFGCGSFGEL MMMNQHSNGL FVQDTQKNQI  120
GVATGSKQVD GPVKVVKENG SSNVSEDSQS SGGNNGHDDA KCMEISSKVF NAKKRKRTGK  180
DSEQEDKKEK DEQSPNSNAN KTNSGKQASD PVKDGYIHMR ARRGQATNSH SLAERIRREK  240
ISERMKFLQD LVPGCDKVTG KAVMLDEIIN YVQSLQCQIE FLSMKLSAVN PVLDFNLESL  300
LAKDALQVPA PTFPQDMSML YPPLPYFSQK GFMQPNLSSM STLNGGLKRQ ETHGYESDQH  360
NVVQMNPETS TAPDHEKDTT ANTEVEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	177	KKRKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g032500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460329.1	0.0	PREDICTED: transcription factor bHLH76-like
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	R0IDB9	0.0	R0IDB9_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010460329.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16689	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	0.0	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]