PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g031930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 42407.2 Da PI: 7.0867 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 101 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v +G+ +W++Ia++++ gR++k+c++rw++ Csa14g031930.1 101 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 146 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 153 | 196 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++++k++w+ Csa14g031930.1 153 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNSVKNHWHV 196 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.08 | 96 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-14 | 100 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 101 | 146 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-28 | 101 | 194 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-26 | 102 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-12 | 104 | 145 | No hit | No description |
PROSITE profile | PS51294 | 27.533 | 148 | 202 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 152 | 200 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 153 | 195 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-11 | 155 | 195 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 155 | 201 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MFITEKQLWM DEIAARRASS SSLDFPFNDI NINQNHHHRH CNTSYEFEIL KSPLGDIAAN 60 EEESNNNHNP NFSNSESAKK ETTDSGQSWS SSSSKPSTLG RGHWRPAEDV KLKELVSIYG 120 PQNWNLIAEK LQGRSGKSCR LRWFNQLDPR INRRAFTEEE EERLMQAHRI YGNKWAMIAR 180 LFPGRTDNSV KNHWHVIMAR KYREHSSAYR RRKLMNNNPL KPHLTTTHHP NPNPNYHSFL 240 STNHYFAQPF PEFNLAHHLV NNAPITSDHN QLVLPFHCFQ GYESIDTPMV VSMFGNQMMV 300 GDNVGATSDA LYKFPYIDPR SQEKADPDEP MNWIGKEAVD EEVIEKAKKE PHFFDFLGLG 360 TGDRSES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 99 | 201 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g031930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334816 | 0.0 | AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds. | |||
GenBank | AY519559 | 0.0 | AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds. | |||
GenBank | DQ446291 | 0.0 | DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds. | |||
GenBank | DQ652862 | 0.0 | DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460263.1 | 0.0 | PREDICTED: myb-like protein A | ||||
Swissprot | Q9LQX5 | 0.0 | MY117_ARATH; Transcription factor MYB117 | ||||
TrEMBL | D7KQL7 | 0.0 | D7KQL7_ARALL; T24P13.16 | ||||
STRING | XP_010460263.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.2 | 0.0 | myb domain protein 117 |
Publications ? help Back to Top | |||
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