PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g031920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 373aa    MW: 41563.7 Da    PI: 6.6725
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g031920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.23.3e-37109168261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s ntkfCyynny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  Csa14g031920.1 109 PDKILPCPRCNSGNTKFCYYNNYNVNQPRHFCRNCQRYWTAGGSMRTVPVGSGRRKNKGW 168
                     7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-28109166IPR003851Zinc finger, Dof-type
PfamPF027011.5E-30111166IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.369113167IPR003851Zinc finger, Dof-type
PROSITE patternPS013610115151IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSSKIGMSEV RDTPVKLFGW TITSVSHDPL SSSSPVLPDS SSSSSSSSPS LGPHKMNDQS  60
AADNTSLKKI SSDLDKESKE TSENSDDQHS EITTTTTSEE EKSAELKKPD KILPCPRCNS  120
GNTKFCYYNN YNVNQPRHFC RNCQRYWTAG GSMRTVPVGS GRRKNKGWVS SDNYLHITSD  180
DSDNYNSSST KILSFESSDS LVTEDAKHQS RDAKINADFV SQEVNNFEGF PPPQATSSVL  240
PPLPYQYPPN PSFYHMPVYW GCVVPVWSTL EPSTCLGKRT RDEASHETVR DASVKARLVS  300
EPQSISNEAT KATENHVWYP VSMKHEKTEQ FNFFNNGSER KSSNERFVPK TYLSLQANPA  360
AMERSMNFRE SI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g031920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460262.10.0PREDICTED: dof zinc finger protein DOF1.3-like
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLA0A178W5Q60.0A0A178W5Q6_ARATH; Uncharacterized protein
STRINGXP_010460262.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-163Dof family protein