PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g030660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 329aa MW: 37012.6 Da PI: 4.6633 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.6e-09 | 271 | 305 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Csa14g030660.1 271 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 305 669*****************************885 PP | |||||||
2 | ELK | 30.1 | 1.1e-10 | 225 | 246 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrK++++++sLk EFs Csa14g030660.1 225 DLKDRLLRKFGSRISSLKLEFS 246 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.3E-22 | 83 | 127 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.8E-21 | 85 | 126 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.3E-26 | 134 | 185 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-24 | 138 | 184 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.3E-5 | 225 | 246 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-7 | 225 | 246 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 225 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.341 | 245 | 308 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.4E-19 | 246 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-12 | 247 | 312 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 250 | 309 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.00E-11 | 254 | 309 | No hit | No description |
Pfam | PF05920 | 4.8E-17 | 265 | 304 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 283 | 306 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDGVYNFHSA GDYTDKAVLM MSPEILMFPS DYQALLCSSA GENRVSDVFG SDELLSAAAS 60 ALSSEAASIA PEIRRNDDNV SLSVIKTKIA CHPSYPRLLQ AYIDCQKVGA PPEIACLLEE 120 IQRESDVYKR DVVPLSCYGA DPELDEFMET YCDILVKYKS DLARPFDEAT SFLNKIEMQL 180 RNLCTGVDSA RNNVSEDGAI SSDEELSGGD HEVAEDGKQR CEDRDLKDRL LRKFGSRISS 240 LKLEFSKKKK KGKLPREARQ ALLDWWNLHY KWPYPTEGDK IALADATGLD QKQINNWFIN 300 QRKRHWKPSE NMPFAMMDDS SGSFFTEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g030660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002930 | 0.0 | BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds. | |||
GenBank | BT004370 | 0.0 | BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460124.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 6 isoform X1 | ||||
Swissprot | Q84JS6 | 0.0 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | D7KNF2 | 0.0 | D7KNF2_ARALL; Uncharacterized protein | ||||
STRING | XP_010460124.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 0.0 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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