PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g027820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 768aa    MW: 86456.1 Da    PI: 7.9191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g027820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd+++++G g+W++ +r  g+ R++k+c++rw +yl
   Csa14g027820.1 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.37.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   Csa14g027820.1  67 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
3Myb_DNA-binding56.37.6e-18293337147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   Csa14g027820.1 293 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 337
                      89********************.*********.************97 PP
4Myb_DNA-binding57.62.8e-18503550148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+llvd+++++G g+W++ +r  g+ R++k+c++rw +yl
   Csa14g027820.1 503 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 550
                      79********************************************97 PP
5Myb_DNA-binding56.37.6e-18556600147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   Csa14g027820.1 556 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 600
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.153961IPR017930Myb domain
SuperFamilySSF466893.1E-3012108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002496.4E-161461IPR001005SANT/Myb domain
CDDcd001678.49E-111661No hitNo description
PROSITE profilePS5129428.83662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2765116IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002494.7E-1667111IPR001005SANT/Myb domain
CDDcd001672.21E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.7E-11273300IPR009057Homeodomain-like
SuperFamilySSF466899.84E-22273345IPR009057Homeodomain-like
PROSITE profilePS500904.147274287IPR017877Myb-like domain
PROSITE profilePS5129428.836288342IPR017930Myb domain
SMARTSM007171.8E-17292340IPR001005SANT/Myb domain
PfamPF002494.7E-16293337IPR001005SANT/Myb domain
CDDcd001672.21E-11295338No hitNo description
Gene3DG3DSA:1.10.10.601.6E-23301339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-24494553IPR009057Homeodomain-like
PROSITE profilePS5129418.153498550IPR017930Myb domain
SuperFamilySSF466893.1E-30501597IPR009057Homeodomain-like
SMARTSM007172.6E-14502552IPR001005SANT/Myb domain
PfamPF002496.4E-16503550IPR001005SANT/Myb domain
CDDcd001678.49E-11505550No hitNo description
PROSITE profilePS5129428.836551605IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-27554605IPR009057Homeodomain-like
SMARTSM007171.8E-17555603IPR001005SANT/Myb domain
PfamPF002494.7E-16556600IPR001005SANT/Myb domain
CDDcd001672.21E-11558601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY  60
LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPNTHRLIN ESAASLVVLP PSSSSLQNDV VVEPLRLDFA GPVKPEPVQG EEISGIHNNN  180
NCTSSGTTSE KDFGNENDWV LNLELSVGPA ATRYHHRYES TTRKVSVVDS AESNRRWGSE  240
LFGGAQSDAV CLCCRVGLFH NESCRNCRNC RLQRCGKSCR LRWMNYLRPD LKRGNFTEDE  300
DELIIKLHSL LGNKWSLIAG RLPGRTDNEI KNYWNTHIKR KLLSRGIDPN THRLINESAA  360
SLVVLPPSSS SLQNDVVVEP LRLDFAGPVK PEPVQGEEIS GIHNNNNCTS SGTTSEKDFG  420
NENDWVLNLE LSVGPAATRY HHRYESTTRK VSVVDSAESN RRWGSELFGG AQSDAIRIDR  480
EIEEEGEGEM GRSPCCEKAH MNKGAWTKEE DQLLVDYIRK HGEGCWRSLP RAAGLQRCGK  540
SCRLRWMNYL RPDLKRGNFT EDEDELIIKL HSLLGNKWSL IAGRLPGRTD NEIKNYWNTH  600
IKRKLLSRGI DPNTHRLINE SAASLVVLPP SSSSLQNDVV VEPLRLDFAG PVKPEPVQGE  660
EISGIHNNNN CTSSGTTSEK DFGNENDWVL NLELSVGPAA TRYHHRYEST TRKVSVVDSA  720
ESNRRWGSEL FGGAQSDAVC LCCRVGLFHN ESCRNCRNCR NSDVRIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27126055108B-MYB
1h8a_C2e-271260525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g027820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0725430.0AY072543.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460022.10.0PREDICTED: transcription factor MYB3-like
RefseqXP_010460023.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9S9K91e-152MYB3_ARATH; Transcription factor MYB3
TrEMBLR0IIJ81e-161R0IIJ8_9BRAS; Uncharacterized protein
STRINGXP_010460022.10.0(Camelina sativa)
STRINGXP_010460023.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-137myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]