PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g027420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 348aa    MW: 38529.9 Da    PI: 8.5746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g027420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2086135255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Csa14g027420.1  86 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 135
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.13E-3485145No hitNo description
SuperFamilySSF541712.09E-2386144IPR016177DNA-binding domain
SMARTSM003805.4E-3986149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3286144IPR001471AP2/ERF domain
PROSITE profilePS5103223.23586143IPR001471AP2/ERF domain
PRINTSPR003673.3E-118798IPR001471AP2/ERF domain
PfamPF008471.6E-1487135IPR001471AP2/ERF domain
PRINTSPR003673.3E-11109125IPR001471AP2/ERF domain
SMARTSM003800.048174211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-7179206IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-5181206IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MATSMDFYSI SNTTFHQSDP FGGELMEALL PFIKIPSNND SSAFAFSTVP TPIPSYRSDL  60
YQNHHLRPKP VSMKQTGASL PKPMKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE  120
EAALAYDKAA FKLRGDFARL NFPNLRHNGS NIGEYQPLQS SVDAKLEAIC QNLAETTQKQ  180
KQEAALAYDK AAFKLRGDFA RLNFPNLRHN GSNIGEYQPL QSSVDAKLEA ICQNLAETTQ  240
KQKQVKSTKK ATSRRRSSST AAVKQTETAD SGVKSEDYSS AGSSPTLTES YGSGGSSSPL  300
SDLTFGDAEE EIQPPWNENF ALEKYPSYEI DWDSILQSSS SSSSLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2085143160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g027420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091948.11e-165PREDICTED: ethylene-responsive transcription factor RAP2-13-like isoform X1
RefseqXP_019091949.11e-165PREDICTED: ethylene-responsive transcription factor RAP2-13-like isoform X2
SwissprotQ9LM152e-99RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLV4KA861e-108V4KA86_EUTSA; Uncharacterized protein
STRINGXP_010459960.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-88ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]