PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g027360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 270aa MW: 31065.1 Da PI: 5.2719

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g027360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.9	4.7e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++ l +s Csa14g027360.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSESLSLFS 58 79*****************************************9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.497	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.01E-28	2	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.78E-32	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-24	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SESLSLFSGK 60 TRIEDVFTRF INLTKQERER DIQSKECLLR ILQQLKTENA IALQFNRLTC NRKVQDLQRE 120 VCRLQQQLQM AEEELRRYEP DPVRFTSLED YEVCEKQLLD TLTNVLQREL SSAMYEPLLQ 180 GSSSSSNQNN MSECHVTNHK DEMFPEWAQT YSSSALFASM QQQQHGGVGP SIDEMMPAQQ 240 GEIPVATTEA QADREVSNYE TRAPQLSRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-16	1	54	1	54	MEF2 CHIMERA
6byy_B	5e-16	1	54	1	54	MEF2 CHIMERA
6byy_C	5e-16	1	54	1	54	MEF2 CHIMERA
6byy_D	5e-16	1	54	1	54	MEF2 CHIMERA
6bz1_A	5e-16	1	54	1	54	MEF2 CHIMERA
6bz1_B	5e-16	1	54	1	54	MEF2 CHIMERA
6bz1_C	5e-16	1	54	1	54	MEF2 CHIMERA
6bz1_D	5e-16	1	54	1	54	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g027360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB094115	8e-99	AB094115.1 Arabidopsis thaliana At1g22130 mRNA for MADS-box protein, partial cds.
GenBank	DQ056457	8e-99	DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498675.1	1e-147	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-133	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	R0I2E6	1e-135	R0I2E6_9BRAS; Uncharacterized protein
STRING	XP_010498675.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-120	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]