PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g025820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 853aa    MW: 94940.7 Da    PI: 5.3859
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g025820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.9e-28562612252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Csa14g025820.1 562 DKTITLDILRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 612
                     689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.132551632IPR003035RWP-RK domain
PfamPF020426.4E-25564612IPR003035RWP-RK domain
SuperFamilySSF542771.32E-22743838No hitNo description
SMARTSM006661.7E-26752835IPR000270PB1 domain
PROSITE profilePS5174528.83752835IPR000270PB1 domain
CDDcd064072.25E-43753833No hitNo description
Gene3DG3DSA:3.10.20.2403.7E-21753832No hitNo description
PfamPF005641.1E-19753834IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MEDSFLQAEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ  60
DTSAALCTSG GVVSQMYGQD CVERSSLDDF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK  120
DYTTERGSLI QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK  180
ALAGLPGRVF LGKLPEWTPD VRFFKSEEYP RVHHAQDCDV RGTLAIPVFE QGSKICLGVI  240
EVVMTTEMVK LRPELESICK ALQAVDLRST ELPIPPSLKG CDLSYKAALP EIRNLLRCAC  300
ETHKLPLAQT WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YVGDPTVREF HEACSEHHLL  360
KGQGVAGQAF LTNGPCFSSD VSNYKKSEYP LSHHANMYGL HGAVAIRLRC IHTGSADFVL  420
EFFLPKDCDD LEEQRKMLNA LSTIMAHVPR SLRTVTDKEL EEESEVIERE EIVKPKIENT  480
SELQHLHGNS PWSASLEEIQ RSNNTSNPQN LGLVFDGGDK PNDGFGLKRG FDYTMDYNVN  540
ESSTFSSGGF SMTAEKKRTK ADKTITLDIL RQYFAGSLKD AAKNIGVCPT TLKRICRQHG  600
IQRWPSRKIK KVGHSLQKIQ RVIDSVQGVS GPLPIGSFYA NFPSLVSQSQ EPSQQAKTSP  660
PPPPPPPVQL AKSPVSSYSQ SSNSSQCCSS ETQLNSGATT DPASASVGVS LKKTSSEIEL  720
QSSSLDETIL TLSSLENVPQ GTNLLSSQDD DFLRIKVSYG EEKIRFRMRN SRRLTDLLWE  780
IGKRFSIDDM SRYDLKYLDE DNEWVLLTCD EDVEECVDVC RTTPSHTIKL LLQVSSQHFS  840
ERSSATEYSL WH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g025820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910150.0AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBankAY1172370.0AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459754.10.0PREDICTED: protein NLP4 isoform X1
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLR0GUM30.0R0GUM3_9BRAS; Uncharacterized protein
STRINGXP_010459754.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein