PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g024120.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 381aa MW: 43772 Da PI: 6.4293

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g024120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.1	5.5e-24	9	54	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 kr e++snrqvt++kR+ngilKKA+ELS+LCd+++ +++fs+tg+ Csa14g024120.1 9 KRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRA 54 689*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.735	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-31	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.18E-27	2	82	No hit	No description
SuperFamily	SSF55455	1.57E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-20	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ 120 VAIYQAQLME CHRRLSCWTN IDRIENTEHL SLLEESLRKS IERIQIHKEH YTKNQLLPIE 180 CTTTQFHSGI QLPMAMGGNS NMQEAHSLSW LPDNDNQQTI LPGDSSYLPH REIDGSIPVY 240 SGCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLGE EYSYPTPFGS TLGMEDDQEK 300 KIKSEMELNN LQQQQQQQQQ QQQLDPSMYD PMANDNSGCF QIPHDQSMFV NDHHHHHHHH 360 HQNWVPDSMF GQTSYNQQPN *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ  120
VAIYQAQLME CHRRLSCWTN IDRIENTEHL SLLEESLRKS IERIQIHKEH YTKNQLLPIE  180
CTTTQFHSGI QLPMAMGGNS NMQEAHSLSW LPDNDNQQTI LPGDSSYLPH REIDGSIPVY  240
SGCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLGE EYSYPTPFGS TLGMEDDQEK  300
KIKSEMELNN LQQQQQQQQQ QQQLDPSMYD PMANDNSGCF QIPHDQSMFV NDHHHHHHHH  360
HQNWVPDSMF GQTSYNQQPN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	3e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g024120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459520.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	D7KH66	0.0	D7KH66_ARALL; AGL102
STRING	XP_010459520.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]