PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g021740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 949aa    MW: 105940 Da    PI: 6.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g021740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09842890348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E e+lv++v+++G g W+ I +        Rt+ ++k++w++++
   Csa14g021740.1 842 AWTVTEVEKLVEGVTKYGVGKWSEIKKVSFssfVYRTPVDLKDKWRNLR 890
                      7************************9998899*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-8762794IPR009057Homeodomain-like
SuperFamilySSF466893.66E-7762793IPR009057Homeodomain-like
SMARTSM0071746764813IPR001005SANT/Myb domain
CDDcd001674.81E-4767793No hitNo description
PROSITE profilePS500905.239768793IPR017877Myb-like domain
PROSITE profilePS5129415.582835894IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-13837891IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16837896IPR009057Homeodomain-like
SMARTSM007173.6E-9839892IPR001005SANT/Myb domain
CDDcd116601.53E-19841891No hitNo description
PfamPF002492.2E-6842890IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MFGTVEDYEE MLQDSTFLES RSRSLSSTKQ TGNPVAYKLV RVAGDGRLVP ATDEEMLEVK  60
ELLEKNENDM PVLPDPIQTE EYIPDEGSPS QFLQLECFEG LYEPETAEAY TEIFDPGLFQ  120
SETAEAYTEN LNSRLESKEE LIYESQMLFA LPETKFQISN VQEVQSEALL REPVRFPSNG  180
CSMHQCRDVL PYSNATGSPK EPALSTAASK PEVSRVAGEI CLDNLSIKSL QDTIRAKFGR  240
ETTCKSKQWL KRRITMGMID SCIVPTTSLA IYDNKLVGGG QDTSDAFSND TVDESRAMES  300
KDTPSRPDCL KGHSSDLGRS PVETFVDHYF GNEDFEGEDR SAKRVRKRTR RYIEEISKPS  360
EKQQSDESMI PSKDQSSIEA VSSGGRVVVT RMVPLAGSRI QVPYVSHVRR SRPRENIMAL  420
GPVRFPSNGC SMHQCRDVLP YSNATGSPKE PALSTAASKP EVSRVAGEIC LDNLSIKSLQ  480
DTIRAKFGRE TTCKSKQWLK RRITMGMIDS CIVPTTSLAI YDNKLVGGGQ DTSDAFSNDT  540
VDESRAMESK DTPSRPDCLK GHSSDLGRSP VETFVDHYFG NEDFEGEDRS AKRVRKRTRR  600
YIEEISKPSE KQQSDESMIP SKDQSSIEAV SSGGRVVVTR MVPLAGSRIQ VPYVSHVRRS  660
RPRENIMALG EFHSKSWEVK ATPDKSNLNL SPSQWNNDVN RVSGVKSASG PVKKESSKGH  720
LKPISNEVDQ DYMDSENLDS SGESSDDNNR VDLPITQSGI RRKHHRAWTV TEVEKLVEGV  780
TKYGVGKWSE IKKGHLKPIS NEVDQDYMDS ENLDSSGESS DDNNRVDLPI TQSGIRRKHH  840
RAWTVTEVEK LVEGVTKYGV GKWSEIKKVS FSSFVYRTPV DLKDKWRNLR RACFSQTPSN  900
RMGGPNKQGS MAIPTHIMLQ VRELAQKQSP VRKGSRVVVK GSSRNGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1591599KRVRKRTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g021740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459342.10.0PREDICTED: uncharacterized protein LOC104740442
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGXP_010459342.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3