PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g021390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 130aa    MW: 14718.9 Da    PI: 7.8574
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g021390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK41.91.9e-1395129236
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriC 36 
                     +k++s e +s yF++pi++AAkeL+++lT+LK++C
  Csa14g021390.1  95 SKTLSKEIISLYFYMPITQAAKELNIGLTLLKKRC 129
                     5899******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020427.1E-997129IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MMMKSFCKLE YDQVFGKEDH SFSFLNPSSL YSHQSDLANL FFGLEEELPP SASSFLALHD  60
YLLSGYGSVS WKKSETISTK KRRCREECVS SCSDSKTLSK EIISLYFYMP ITQAAKELNI  120
GLTLLKKRC*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g021390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118091e-58AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026841e-58CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501518.11e-70PREDICTED: protein RKD1-like
SwissprotQ9M9U98e-56RKD1_ARATH; Protein RKD1
TrEMBLR0IJY64e-55R0IJY6_9BRAS; Uncharacterized protein
STRINGXP_010501518.15e-70(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-58RWP-RK domain-containing protein