PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g011660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-X1
Protein Properties Length: 1141aa    MW: 124457 Da    PI: 8.1479
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g011660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.21.5e-07339357119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  Csa14g011660.1 339 CGRHQCERTCHIGPCDPCQ 357
                     ******************6 PP
2zf-NF-X117.77.7e-06403420118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C+  CH+GpC+ C
  Csa14g011660.1 403 CGNHFCSDVCHPGPCGDC 420
                     ****************99 PP
3zf-NF-X119.91.6e-06465479418
        zf-NF-X1   4 HkCqklCHeGpCppC 18 
                     H+C++ CH G+CppC
  Csa14g011660.1 465 HTCNEVCHAGDCPPC 479
                     *************** PP
4zf-NF-X118.64.2e-06560578119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  Csa14g011660.1 560 CGQHSCESLCHSGHCPPCL 578
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.75E-6161232No hitNo description
PROSITE profilePS500169.009169230IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590172227IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.583172228IPR001841Zinc finger, RING-type
CDDcd060082.02E-6261322No hitNo description
SMARTSM004380.023284302IPR000967Zinc finger, NF-X1-type
PfamPF014228.5286301IPR000967Zinc finger, NF-X1-type
CDDcd060086.79E-13329377No hitNo description
SMARTSM004384.9E-5339358IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-5339356IPR000967Zinc finger, NF-X1-type
CDDcd060082.34E-8397438No hitNo description
SMARTSM004386.1E-5403422IPR000967Zinc finger, NF-X1-type
PfamPF014228.4E-5403420IPR000967Zinc finger, NF-X1-type
CDDcd060081.42E-11452499No hitNo description
SMARTSM004382.0E-5462481IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4464479IPR000967Zinc finger, NF-X1-type
CDDcd060081.80E-4511571No hitNo description
SMARTSM00438120521552IPR000967Zinc finger, NF-X1-type
PfamPF0142218521532IPR000967Zinc finger, NF-X1-type
CDDcd060089.08E-10550602No hitNo description
SMARTSM004382.0E-4560579IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4560577IPR000967Zinc finger, NF-X1-type
CDDcd060081.14E-6607654No hitNo description
SMARTSM004380.079617635IPR000967Zinc finger, NF-X1-type
SMARTSM004380.031670700IPR000967Zinc finger, NF-X1-type
PfamPF014220.028670685IPR000967Zinc finger, NF-X1-type
CDDcd060083.60E-5698747No hitNo description
PfamPF0142211702728IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016709730IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1141 aa     Download sequence    Send to blast
TFFPNPDRNS ENRDAAGTAS HPAYPQRQLN GSGPPPYNQQ QRSNNVGPRP PNRQRRNDAP  60
GTLPVNHQHQ RNDYIGPPPP NQQRRNDAAG ILPENQHQRS NFVGPPPPNR QRRNNASGAL  120
PDNRQRVSSR TRPVYQGKRV AKEEDIVVMT DPNLPQLVQE LQEKLVKSSI ECMICYDKVG  180
RSANIWSCSS CYSIFHMNCI KRWARAPTSI DLLAEKNQGD NWRCPGCQSV QLTSSKEISY  240
RCFCGKRKDP PSDPYLTPHS CGEPCGKPLE KEFAAAEITK EDLCPHVCVL QCHPGPCPPC  300
KAFAPPRSCP CGKKMVTTRC SERRSVLVCG QRCDKLLNCG RHQCERTCHI GPCDPCQVLV  360
NATCFCKKKV ETVICGDMNV KGELKAEDGV YSCSFNCGKP LGCGNHFCSD VCHPGPCGDC  420
DLLPSRVKTC YCGKTRLEEQ IRQSCLDPIP SCSSVCRKLL PCRLHTCNEV CHAGDCPPCL  480
VQVNEKCGCG STSRAVECYI TTSSETEKFV CAKPCGRKKN CGRHRCSQRC CPLMNGKKND  540
RSGDWDPHVC QIPCGKKLRC GQHSCESLCH SGHCPPCLEM IFTDLTCACG RTSIPPPLPC  600
GTPVPSCQHP CSIPQPCGHS ATHGCHFGDC PPCSAPVEKK CVGGHVVLRN IPCGLKDIRC  660
NKICGKTRRC GMHACARSCH PEPCDSYNES EAGMRVTCGQ KCGAPRRDCR HTCAALCHPS  720
APCPDLRCEV PVTITCSCGR ISATVPCDAG GRSANSSNVF SAAYDEASIL QKLPAPLQPV  780
ESSGNRIPLG QRKLSCDDEC AKLERKRVLQ DAFDITPPNL EALHFSESSA MTEIISDLYR  840
RDPKWVLAVE ERCKFLVLGK ARGSTSALKV HVFCPMQKDK RDTVRLIAER WKLGVSNAGW  900
EPKRFTVVHV TAKSKPPTRI IGARGGAISI GGPHPPSFDP LVDMDPGLVV ALLDLPREAN  960
ISALVLRFGG ECELVWLNDK NALAVFHDHA RAATAMRRLE HGSVYYGAVV VQTGGQSSSH  1020
SNAWGKLPGG SAWDVHKGNP WKKAVIQESD DSWGAEDSPI GGSSRDIQAS ALRSAKSNNP  1080
IATSVNRWSV LEPEKASSTS SLEPITQPQI EESSSSKAAD KQPVEGSGEE VVDDWEKVCD  1140
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Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g011660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458351.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_019091551.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A178WL380.0A0A178WL38_ARATH; NFXL1
STRINGXP_010458351.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1