PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g009330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 191aa    MW: 21317.2 Da    PI: 4.8418
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g009330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.69.1e-4333131199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeAear+rdPvyG++g i +lq+q+++l+aela
  Csa14g009330.1  33 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVKSMVYEAEARIRDPVYGSAGAIYNLQRQVSELQAELA 127
                     7********************************************************************************************** PP

          DUF260  96 llke 99 
                     +++ 
  Csa14g009330.1 128 KAQV 131
                     9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.21932133IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4233130IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MESNGDASAA TTPIISSSSS PPPRLSPRVV LSPCAACKIL RRRCAEKCVL APYFPPTDPA  60
KFTIAHRVFG ASNIIKFLQE LPESQRTDAV KSMVYEAEAR IRDPVYGSAG AIYNLQRQVS  120
ELQAELAKAQ VEMVNMQLQR SNLLELIYNN MEQVQKQEQD NMSFESNDLG FLEDNSNTNT  180
SMLWWDPLWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-423213410112LOB family transfactor Ramosa2.1
5ly0_B2e-423213410112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g009330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738410.0AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458003.11e-140PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR01e-116LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A178WM561e-113A0A178WM56_ARATH; LBD1
TrEMBLR0GS201e-113R0GS20_9BRAS; Uncharacterized protein
STRINGXP_010458003.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-109LOB domain-containing protein 1