PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g008910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 769aa MW: 85586.8 Da PI: 5.5748 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 379.1 | 5.4e-116 | 393 | 763 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ v+P+ k + Csa14g008910.1 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGAERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAI 484 5789**************************************************************9999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN+ +++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g +e ++etg+rLa+++++ +vpfe+n+ +a+++e+ Csa14g008910.1 485 IFANHSLMRFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWET 578 ********************************************************99*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L++++gE +aVn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ + ++n++ F++rf eal +ysa+fd+ ++kl re+e r Csa14g008910.1 579 IKVEDLKLRQGEFVAVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLTREDEMRL 673 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + E+e+ greivnvvaceg+er+er et+++W+ rl +aGF+++pl+++ +++ kl + + +++ + v+++s++l++gWk+r +++ S W Csa14g008910.1 674 MFEKEFYGREIVNVVACEGTERVERPETYKQWQVRLIRAGFRQLPLEKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSIW 763 **************************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.691 | 367 | 744 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-113 | 393 | 763 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MGSYPDGFPG SMDQFDFTSE FDLPASNDAL GSAATNGFYL DEPFLNFASM DPPPPQSYPH 60 NNNNNKAASG GDLLSSPSDD ADFSDSVLKY ISQVLMEEDM EEKPCMFHDA LALQAAEKSL 120 YEALGEKYPS SSSPASIDHP DKLTHDSPDG SCSGGAFSDY ASTTTTTSSD SHWSVDGFEN 180 RSSWLQSPMP SNFVFQSTSR SNSVTVGGVG NRSGFGDDLV SNMFKDSELA MQFKRGVEEA 240 SKFLPKSSQL FIDVDSYIPS NSGSKENGSE VFVKTEKKDE TEHHSSALPP NRLTGKKSHW 300 RDDDEDSVEE RSNKQSAVYV EESELSEMFD KILVCGPGKP VCILDQKFPA EPANVETAQQ 360 VAVQSNGAKI RGKKSTATTS LSNDSGKKET ADLRTLLVLC AQAVSVDDRR TANEMLRQIR 420 EHSSPLGNGA ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK 480 KAAIIFANHS LMRFTANANT IHIIDFGISY GFQWPALIHR LSLRPGGSPK LRITGIELPQ 540 RGFRPAEGVQ ETGHRLARYC QRHNVPFEYN AIAQKWETIK VEDLKLRQGE FVAVNSLFRF 600 KNLLDETVLV NSPRDAVLKL IRKVNPNVFI PAILSGNYNA PFFVTRFREA LFHYSAVFDM 660 CDSKLTREDE MRLMFEKEFY GREIVNVVAC EGTERVERPE TYKQWQVRLI RAGFRQLPLE 720 KELMQNLKLK IDNGYDKNFD VDQNSNWLLQ GWKGRIVYAS SIWVPSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-51 | 400 | 767 | 25 | 381 | Protein SCARECROW |
5b3h_D | 5e-51 | 400 | 767 | 25 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g008910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457934.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | R0IBA1 | 0.0 | R0IBA1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010457934.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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