PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g008910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 769aa    MW: 85586.8 Da    PI: 5.5748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g008910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.15.4e-1163937631373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + 
  Csa14g008910.1 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGAERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAI 484
                     5789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ +++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e+
  Csa14g008910.1 485 IFANHSLMRFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWET 578
                     ********************************************************99*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++++gE +aVn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysa+fd+ ++kl re+e r 
  Csa14g008910.1 579 IKVEDLKLRQGEFVAVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLTREDEMRL 673
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e+ greivnvvaceg+er+er et+++W+ rl +aGF+++pl+++ +++ kl + + +++ + v+++s++l++gWk+r +++ S W
  Csa14g008910.1 674 MFEKEFYGREIVNVVACEGTERVERPETYKQWQVRLIRAGFRQLPLEKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSIW 763
                     **************************************************************999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.691367744IPR005202Transcription factor GRAS
PfamPF035141.9E-113393763IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MGSYPDGFPG SMDQFDFTSE FDLPASNDAL GSAATNGFYL DEPFLNFASM DPPPPQSYPH  60
NNNNNKAASG GDLLSSPSDD ADFSDSVLKY ISQVLMEEDM EEKPCMFHDA LALQAAEKSL  120
YEALGEKYPS SSSPASIDHP DKLTHDSPDG SCSGGAFSDY ASTTTTTSSD SHWSVDGFEN  180
RSSWLQSPMP SNFVFQSTSR SNSVTVGGVG NRSGFGDDLV SNMFKDSELA MQFKRGVEEA  240
SKFLPKSSQL FIDVDSYIPS NSGSKENGSE VFVKTEKKDE TEHHSSALPP NRLTGKKSHW  300
RDDDEDSVEE RSNKQSAVYV EESELSEMFD KILVCGPGKP VCILDQKFPA EPANVETAQQ  360
VAVQSNGAKI RGKKSTATTS LSNDSGKKET ADLRTLLVLC AQAVSVDDRR TANEMLRQIR  420
EHSSPLGNGA ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK  480
KAAIIFANHS LMRFTANANT IHIIDFGISY GFQWPALIHR LSLRPGGSPK LRITGIELPQ  540
RGFRPAEGVQ ETGHRLARYC QRHNVPFEYN AIAQKWETIK VEDLKLRQGE FVAVNSLFRF  600
KNLLDETVLV NSPRDAVLKL IRKVNPNVFI PAILSGNYNA PFFVTRFREA LFHYSAVFDM  660
CDSKLTREDE MRLMFEKEFY GREIVNVVAC EGTERVERPE TYKQWQVRLI RAGFRQLPLE  720
KELMQNLKLK IDNGYDKNFD VDQNSNWLLQ GWKGRIVYAS SIWVPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5140076725381Protein SCARECROW
5b3h_D5e-5140076725381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g008910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457934.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLR0IBA10.0R0IBA1_9BRAS; Uncharacterized protein
STRINGXP_010457934.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]