PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g007590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 274aa    MW: 31131.4 Da    PI: 6.3499
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g007590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ll+++++++G ++W++ ++  g+ R++k+c++rw +yl
   Csa14g007590.1 14 KGPWSAEEDQLLINYITLHGHPNWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding46.58.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   Csa14g007590.1  67 RGNFTSLEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.489965IPR017930Myb domain
SuperFamilySSF466893.28E-2910108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001673.30E-101661No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129417.21366116IPR017930Myb domain
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PfamPF002493.8E-1367112IPR001005SANT/Myb domain
CDDcd001673.42E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRRPCCEKM GLKKGPWSAE EDQLLINYIT LHGHPNWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSLEEDTIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLHQNQ  120
DEDNKETVVT ATTDVKRPTS PEQQQRSTDA KRPTSPEQQQ QSSSSADVSA VTTSGNNNDH  180
MSNNNSKDSA TSSKDVPALI DESFWSEVVS MDYNISGDDH EKNEIKIENW EGSLDRSDKG  240
YNYSKLYNHD MEFWFDHLTT SPIVGEISDI SDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00127DAPTransfer from AT1G06180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g007590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934371e-158AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180.
GenBankAY5195501e-158AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBankBT0251731e-158BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457744.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LNC91e-133MYB13_ARATH; Transcription factor MYB13
TrEMBLV4L2001e-137V4L200_EUTSA; Uncharacterized protein
STRINGXP_010457744.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-126myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]