PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g007560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 430aa    MW: 47910.8 Da    PI: 6.1981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g007560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11229270854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + +++f  Lr+l+P++     +K++ a+i+ +A++YIk+L
  Csa14g007560.1 229 TERERRVHFKDRFGDLRSLIPNP-----TKNDRASIVGEAIDYIKEL 270
                     7**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.61E-9219272No hitNo description
SuperFamilySSF474599.46E-13220285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.208221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-10221282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-7227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8229270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEGGGGGGGG MFEEIGCFDP NAPGELTAER SVSPSEPPPA ITVVGSNNNS NCSLEDLSEL  60
HLSPQDPSLA AASASAHVHQ LHINATPPNC EHHQFQSSMH QTLLQDPSSY AQQSNNWDNG  120
YQEFVNLGPN HTTPDLLSLL QLPRSSLPPF ANPCLQDIMM TSSSVSAYDP LFHLNFPLQH  180
PNGTFLGVDQ DQAETNQGVN LLYDEENNNL DVGLNRKGRG SKKRKIFPTE RERRVHFKDR  240
FGDLRSLIPN PTKNDRASIV GEAIDYIKEL LRTIDEFKML VEKKRIKRLK REGDDVVDEN  300
FKAQSEVVEQ SSINKKNNAL RCSWLKRKSK FTEVDVRIID DEVTIKIVQK KKINSLLFVS  360
KVIDQLQLDL HHVAGAQIGE HHSFLFNTKI CKGSSVYASA IADRVMEVLE KQYMEALSMN  420
NGYHCYSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281288EKKRIKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g007560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886190.0AF488619.1 Arabidopsis thaliana clone bHLH089 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0042620.0BT004262.1 Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457738.10.0PREDICTED: transcription factor bHLH89-like
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLD7KFB60.0D7KFB6_ARALL; Basic helix-loop-helix family protein
STRINGXP_010457738.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]