PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g007150.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 412aa MW: 44353.8 Da PI: 8.465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g007150.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	344	389	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq Csa14g007150.1 344 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 389 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.656	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-13	341	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.26E-11	342	393	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-13	343	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-8	344	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-12	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MSQSLEKKRK RHLSLSFYFL FKKNQITLLC FASLSLFSLF SLHLAIEVMY QSSSSTSSSS 60 QRSSLPGGGS GGGLIRYGSA PGSFLNSVVD EVIGGGSNAR DFTGYNQPSD NFIGNFFAGA 120 DSSSLRSDST TCGVNSSSEG QKHNNNNNNK DVFLDRSYGG GAGGGFNHEI SLHKSNELGG 180 GSGSYSLARQ RSSPADFFSY LAADKNNFAL NQPTSEYSPQ GGSSNAGRGH SRLKSQLSFT 240 SHDSLARINE VNETPVHDGS GHSFSAASFG AAATDSWDDG SGSIGFTVTR PNKRSKDMDS 300 GLFSQYSLPS DTSMNYMDNF MQLPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK 360 LQDLVPNMDK QTSYSDMLDL AVQHIKGLQH QLQNLKKDQE NCTCGCSEGQ S*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MSQSLEKKRK RHLSLSFYFL FKKNQITLLC FASLSLFSLF SLHLAIEVMY QSSSSTSSSS  60
QRSSLPGGGS GGGLIRYGSA PGSFLNSVVD EVIGGGSNAR DFTGYNQPSD NFIGNFFAGA  120
DSSSLRSDST TCGVNSSSEG QKHNNNNNNK DVFLDRSYGG GAGGGFNHEI SLHKSNELGG  180
GSGSYSLARQ RSSPADFFSY LAADKNNFAL NQPTSEYSPQ GGSSNAGRGH SRLKSQLSFT  240
SHDSLARINE VNETPVHDGS GHSFSAASFG AAATDSWDDG SGSIGFTVTR PNKRSKDMDS  300
GLFSQYSLPS DTSMNYMDNF MQLPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK  360
LQDLVPNMDK QTSYSDMLDL AVQHIKGLQH QLQNLKKDQE NCTCGCSEGQ S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g007150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086106	0.0	AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457680.1	0.0	PREDICTED: transcription factor bHLH128
Swissprot	Q8H102	0.0	BH128_ARATH; Transcription factor bHLH128
TrEMBL	R0I6G4	0.0	R0I6G4_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010457680.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]