PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g002190.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 385aa MW: 43689.2 Da PI: 5.5548

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g002190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.4	6.7e-41	14	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+G+rF Ptdee+v++yL++k +++ ++++vi++v i++++Pw+Lp + ++k ++k+w fFs++ +ky +g+++ r+tksgyWk tgk k+++ Csa14g002190.1 14 PVGLRFCPTDEEIVDDYLRPKNLETDtSRVDQVISTVTICSFDPWELPcQsRIKLKDKSWCFFSRKVNKYDRGEQQIRKTKSGYWKITGKPKSII 108 89****************9776663777788**********9634888899********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g +++L+fy ++ g+k+dWvmhey+l Csa14g002190.1 109 R-NRVKIGARRVLMFYLSKELGGSKSDWVMHEYHL 142 9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-48	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	43.2	13	160	IPR003441	NAC domain
Pfam	PF02365	2.1E-21	14	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSSFMIAAGE METPVGLRFC PTDEEIVDDY LRPKNLETDT SRVDQVISTV TICSFDPWEL 60 PCQSRIKLKD KSWCFFSRKV NKYDRGEQQI RKTKSGYWKI TGKPKSIIRN RVKIGARRVL 120 MFYLSKELGG SKSDWVMHEY HLLSPVQMMM TYTICKVTFK GEENEVSSPS AGSEIEQSRS 180 LIPLHLVNNS GGSEDSSQFG LQEEAHQLDD AAIIASKEEE WKTWLNDNDG EERNIMFLQD 240 NRNDYRPPQS LTGVFTDDSS DDNDSDFLSP ATNSIGTSST CDDSFGSSNH RIDQIKDLQE 300 PPNSTVELVS PLTQEVSQAL RTNVDTNEMK KKMNPCDDAR GTEIGEHKLG QEMIKKNKRT 360 GNFFLRMVQK FVKKIRLCSP ISRT*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSSFMIAAGE METPVGLRFC PTDEEIVDDY LRPKNLETDT SRVDQVISTV TICSFDPWEL  60
PCQSRIKLKD KSWCFFSRKV NKYDRGEQQI RKTKSGYWKI TGKPKSIIRN RVKIGARRVL  120
MFYLSKELGG SKSDWVMHEY HLLSPVQMMM TYTICKVTFK GEENEVSSPS AGSEIEQSRS  180
LIPLHLVNNS GGSEDSSQFG LQEEAHQLDD AAIIASKEEE WKTWLNDNDG EERNIMFLQD  240
NRNDYRPPQS LTGVFTDDSS DDNDSDFLSP ATNSIGTSST CDDSFGSSNH RIDQIKDLQE  300
PPNSTVELVS PLTQEVSQAL RTNVDTNEMK KKMNPCDDAR GTEIGEHKLG QEMIKKNKRT  360
GNFFLRMVQK FVKKIRLCSP ISRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	10	145	14	145	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	10	145	14	145	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	10	145	14	145	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	10	145	14	145	NO APICAL MERISTEM PROTEIN
3swm_A	3e-26	10	145	17	148	NAC domain-containing protein 19
3swm_B	3e-26	10	145	17	148	NAC domain-containing protein 19
3swm_C	3e-26	10	145	17	148	NAC domain-containing protein 19
3swm_D	3e-26	10	145	17	148	NAC domain-containing protein 19
3swp_A	3e-26	10	145	17	148	NAC domain-containing protein 19
3swp_B	3e-26	10	145	17	148	NAC domain-containing protein 19
3swp_C	3e-26	10	145	17	148	NAC domain-containing protein 19
3swp_D	3e-26	10	145	17	148	NAC domain-containing protein 19
4dul_A	2e-26	10	145	14	145	NAC domain-containing protein 19
4dul_B	2e-26	10	145	14	145	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g002190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457187.1	0.0	PREDICTED: NAC domain-containing protein 3-like
Swissprot	Q5PP28	1e-155	NAC3_ARATH; NAC domain-containing protein 3
TrEMBL	R0ILL2	0.0	R0ILL2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010457187.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02220.1	1e-157	NAC domain containing protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chou ML, et al. The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana. Int J Mol Sci, 2018. [PMID:29937503]