PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g002180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 824aa MW: 94551.9 Da PI: 5.098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.5 | 8.6e-39 | 5 | 138 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+P+deelv +yL++k+eg++ ++e +i+ev+i++++PwdL+ + k+k+++ wyfFs+r +ky +g+r++r+t sg Wk tg++ ev+++ Csa14g002180.1 5 VGFGFRPNDEELVGHYLRNKIEGNSSHVEVAISEVNICSYDPWDLRfQsKYKSRDAMWYFFSCRVNKYGNGNRQSRTTVSGKWKLTGESVEVKDQ 99 7************************999777**************85247888889**************************************9 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g k++Lvf ++r p+ +k+dWv+he++ Csa14g002180.1 100 wgiasgVRGKIGHKRVLVFLDARFPDKTKSDWVIHEFHY 138 8887765556***************************96 PP | |||||||
2 | NAM | 98.3 | 1.1e-30 | 420 | 570 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+P+d+elv +yL +k++g++ +e +i+ev+iy+++Pw+L+ +k++++++ +yfFs+r++kya+g+r+nr+t sg+Wk tg++++v+++ Csa14g002180.1 420 VGFGFRPRDDELVGYYLYHKIQGNTRLVEWAINEVNIYDFDPWKLRlqSKIESTDRMCYFFSRRENKYARGNRQNRKTPSGRWKLTGEHTDVKDQ 514 7************************888778**************8534888888999************************************9 PP NAM 96 ...............kgel.............vglkktLvfykgrapkgektdWvmheyr 127 + + +g k++L f ++ + +Wv+hey Csa14g002180.1 515 fktwplsatgddnktG--TgddkktgtgednkIGHKRVLQFR--LDNGIVDPNWVIHEYY 570 8888888877665550..05555566666677*********8..44555799*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.436 | 3 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-18 | 5 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-39 | 5 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-31 | 412 | 513 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.876 | 418 | 591 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-17 | 420 | 569 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-31 | 544 | 591 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MEDKVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA 60 MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD 120 ARFPDKTKSD WVIHEFHYDL LPEHKRTYVI CRLEYKGDDP DILSAYAIDP TPAFAPNMAN 180 SEGSVVNQSR QGNSESYNTY SEYDSANRGQ QFNMQQSVQG NSGYYNPFPE YDLANNGQWL 240 SDYFNLQQQV PYSAPYDENS ELIRNFVIEE TRERTSMQEH YSDHQPKKPV TGVLGDDSSD 300 NDSMTFGDTS SSTDSGCSSN ESYYTPLDDD VPSLNTVVEP LHNYEAQEQP KQLKLPCQSK 360 EKVINTQKSE CEWKMAEDSI KKPPSTNTVK QSWIVLEKRG QRNAQWNYLI NMIVEMDDFV 420 GFGFRPRDDE LVGYYLYHKI QGNTRLVEWA INEVNIYDFD PWKLRLQSKI ESTDRMCYFF 480 SRRENKYARG NRQNRKTPSG RWKLTGEHTD VKDQFKTWPL SATGDDNKTG TGDDKKTGTG 540 EDNKIGHKRV LQFRLDNGIV DPNWVIHEYY HDTILPEHLR TTYVICRLEY KGKDKNILSA 600 KSKPTDPSFV PDMMTNSAGS VVNQSGYYNT YSEYDSTNHH GQQFNEYLNM LDQVPQSVSY 660 DGGQQMILDD EVYPYVGLLL NENCNVCIPK KPVTGYFTDD SCGSDTDSMI GSDNSSVIEP 720 YHPPIDDTPS LNTTKPLHSS EAQEQPELHL QGQEKVISRH VSNPELEMAE DSTIKNTPST 780 KTVKQEWIVF EDISQRKSQW IYLKNMIIGF LLFISIIGWI IGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-21 | 6 | 517 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g002180.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF439834 | 0.0 | AF439834.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds. | |||
GenBank | BT001115 | 0.0 | BT001115.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457185.1 | 0.0 | PREDICTED: NAC domain-containing protein 1-like | ||||
Swissprot | Q0WV96 | 0.0 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | A0A178WAE4 | 0.0 | A0A178WAE4_ARATH; NAC001 | ||||
STRING | XP_010457185.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 0.0 | NAC domain containing protein 1 |
Publications ? help Back to Top | |||
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