PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g001400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 396aa    MW: 45520.3 Da    PI: 5.5413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g001400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-062883211755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f+ L++++P+a       ++Ka++L  +++Y+++L+
  Csa14g001400.1 288 NEKFSVLKSMVPTA-----NEVDKASVLNNTIKYLQQLE 321
                     99***********8.....58****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-2017134IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.788271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-4280326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-5285325No hitNo description
SuperFamilySSF474594.06E-9288340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9288339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSSTMADGKE AIRNIRLRKQ LVVAVKSLQW NYAIFWSSSQ TQHGVLKWEE GYYNGDIRKR  60
KNKSYEADST CGLQRSTQLR NLYLCMLEGD TKITTTHGHG RDNDDKTSSS NVMLSPDDLS  120
DEEWYYLVCM SYSSYLPSED PNLIQHIKEC LLETSNPDCS EIYISEGNSK LVNLKDGNLQ  180
FWSKPDEGLQ YKKTLSTVLR FATNRPKKKD LASSDFGYSF LRWKSQSVTS NPNYHQKQNN  240
VLWKILHDVP LMHSADEKKM FQAETTGLNQ RVSMECDDDD PSDKSEENEK FSVLKSMVPT  300
ANEVDKASVL NNTIKYLQQL EARVKELESR IGQIKPTMKE NMLSELIEET SETKQGMVRD  360
ETAHVRVKLK ESEVFIEVRC LYRDYIVADI MEALE*
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g001400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474787.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F11e-112BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087HKB21e-147A0A087HKB2_ARAAL; Uncharacterized protein
STRINGXP_010474787.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.11e-114bHLH family protein