PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14039s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 99aa MW: 10878.2 Da PI: 9.9301 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 65.3 | 1e-20 | 66 | 99 | 4 | 37 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCr 37 ++++cprC+stntkfCyynnysl+qPryfCk+Cr Csa14039s010.1 66 EKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCR 99 789******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-15 | 63 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-17 | 67 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 18.967 | 68 | 99 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MMNVKPMDQI MIPNNSTHQS NTASNARPNA ILTSNGVSAA GTTVSGVSNN NNNTAVVAER 60 KARPLEKINC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14039s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006418 | 1e-113 | AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence. | |||
GenBank | AJ237810 | 1e-113 | AJ237810.1 Arabidopsis thaliana dag2 gene, exons 1-2. | |||
GenBank | AJ237811 | 1e-113 | AJ237811.1 Arabidopsis thaliana mRNA for putative DNA binding protein (partial). | |||
GenBank | BT003328 | 1e-113 | BT003328.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g46590) mRNA, complete cds. | |||
GenBank | BT008842 | 1e-113 | BT008842.1 Arabidopsis thaliana At2g46590 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-113 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506672.1 | 5e-65 | PREDICTED: dof zinc finger protein DOF2.5 | ||||
Swissprot | Q9ZPY0 | 1e-56 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A0D3B710 | 4e-56 | A0A0D3B710_BRAOL; Uncharacterized protein | ||||
STRING | XP_010506672.1 | 2e-64 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.1 | 9e-49 | Dof family protein |
Publications ? help Back to Top | |||
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