PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g057420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 377aa MW: 40762.5 Da PI: 7.8506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g057420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.2e-12	202	241	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq Csa13g057420.1 202 KRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 241 7****************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.322	191	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-11	195	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-14	202	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	202	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-12	202	245	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-14	204	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSQCVPNCHI DDTPAAAAAT TTVRSTTAAD IPMLDYEVAE LTWENGQLGL HGLGPPRVTA 60 SSTKYSTGAG GTLESIVDQA TRLPNPKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLQEQQ 120 SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT 180 IDDHDSVCHS RPLARTIYRT IKRRDKINQR MKTLQKMVPN SSKTDKASML DEVIEYLKQL 240 QAQVSMMSRM NMPSMMLPMA LQQQQQLQMS LMSNPMGLGI GMGMPGLGLL DLNSMNRAAA 300 ATPNIHANMM PNPFAPMTSP SWDASSNDTR FQSPLIPDPM AAFLACSSQP TTMEAYSRMA 360 ALYQQMQQQL PPSIPK*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSQCVPNCHI DDTPAAAAAT TTVRSTTAAD IPMLDYEVAE LTWENGQLGL HGLGPPRVTA  60
SSTKYSTGAG GTLESIVDQA TRLPNPKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLQEQQ  120
SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT  180
IDDHDSVCHS RPLARTIYRT IKRRDKINQR MKTLQKMVPN SSKTDKASML DEVIEYLKQL  240
QAQVSMMSRM NMPSMMLPMA LQQQQQLQMS LMSNPMGLGI GMGMPGLGLL DLNSMNRAAA  300
ATPNIHANMM PNPFAPMTSP SWDASSNDTR FQSPLIPDPM AAFLACSSQP TTMEAYSRMA  360
ALYQQMQQQL PPSIPK*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g057420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488561	0.0	AF488561.1 Arabidopsis thaliana clone bHLH016 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK117229	0.0	AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBank	BT025971	0.0	BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456327.1	0.0	PREDICTED: transcription factor UNE10
Swissprot	Q8GZ38	0.0	UNE10_ARATH; Transcription factor UNE10
TrEMBL	D7M5T4	0.0	D7M5T4_ARALL; Uncharacterized protein
STRING	XP_010456327.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]