PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g057280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 516aa    MW: 56655 Da    PI: 5.3633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g057280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.52.6e-1001595112374
            GRAS   2 velLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     +e+L+++Ae+++s  gd+ laq +Larl+++ +sp g+p++R+a+yf+eAL++ l++          +++ ++++ + ++aa+k fse+sP+l+f
  Csa13g057280.1 159 TEQLVKAAEVIESggGDTCLAQGILARLNQQlSSPVGKPLERAAFYFKEALNNLLHN---------VSQTLNPYSLIFKIAAYKSFSEISPVLQF 244
                     789*********98789************998************************9.........55566667789****************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++t Nqa+le+++g +r+Hi+Dfdi++G+QW++L+q+L  R++ +p sl+iT+++sp+++++ el  t+++L++fA+e++++++++vl  + l 
  Csa13g057280.1 245 ANFTSNQALLESFQGFHRLHIVDFDIGYGGQWASLMQELVLRDNAAPlSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLG 339
                     *******************************************99998****************************************8555555 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++  +  + +++Ea+aVn++ + ++          +r+ vL++vk+lsP+++v++++ +++++ +F ++++++l+ ++al++sl+a   ++ +++
  Csa13g057280.1 340 SI-SWPNESEEKEAVAVNISPASFS----------QRPLVLRFVKHLSPTIIVCSDRGCERTDLPFPQQLAQSLHSHAALLESLDAV-NANLDAM 422
                     55.56667888********994433..........5789*********************************************887.56779** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+Er+l+++ei+++v+ + +     ++ +++W++++ ++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+W++ +Lv vS Wr
  Csa13g057280.1 423 QKIERFLIQPEIEKLVMDRSRP---IERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSTWR 511
                     ******************9998...55677*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.876132491IPR005202Transcription factor GRAS
PfamPF035149.1E-98159511IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSFYAHDFEV PTAEPNSVLD ALISPTSSST VSSSHGGNSA VGGGGVATTD EHCGQVVLGD  60
WEQVPHDQEQ SILRLIMGDS TDPSLELNSI LQTSPTFHDS DYASPGFGVV DTTGFALDHH  120
SVPGLLINQS QTHYTQNPAA IYYGHPPAKR LNPGPIGLTE QLVKAAEVIE SGGGDTCLAQ  180
GILARLNQQL SSPVGKPLER AAFYFKEALN NLLHNVSQTL NPYSLIFKIA AYKSFSEISP  240
VLQFANFTSN QALLESFQGF HRLHIVDFDI GYGGQWASLM QELVLRDNAA PLSLKITVFA  300
SPANHDQLEL GFTQDNLKHF ASEINISLDI QVLSLDLLGS ISWPNESEEK EAVAVNISPA  360
SFSQRPLVLR FVKHLSPTII VCSDRGCERT DLPFPQQLAQ SLHSHAALLE SLDAVNANLD  420
AMQKIERFLI QPEIEKLVMD RSRPIERPMM TWQAMFLQMG FSPVTHSNFT ESQAECLVQR  480
TPVRGFHVEK KHNSLLLCWQ RTELVGVSTW RCRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2917051113375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g057280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0363030.0AF036303.1 Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds.
GenBankAF4628310.0AF462831.1 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds.
GenBankAK1172980.0AK117298.1 Arabidopsis thaliana mRNA, clone: RAFL16-86-D11.
GenBankAL1614710.0AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1.
GenBankAY1335370.0AY133537.1 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF6N150.0AF069299.1 Arabidopsis thaliana BAC F6N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456318.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLR0H9P40.0R0H9P4_9BRAS; Uncharacterized protein
STRINGXP_010456318.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]