PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g056940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 674aa    MW: 77582 Da    PI: 6.9786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g056940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.9e-063323691355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R++ N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  Csa13g056940.1 332 RRKENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 369
                     6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3320178IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.604319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-8332383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-5332373No hitNo description
Gene3DG3DSA:4.10.280.106.7E-9332379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF495621.13E-15483620IPR000008C2 domain
Gene3DG3DSA:2.60.40.1504.0E-12485619IPR000008C2 domain
PfamPF001685.6E-9490585IPR000008C2 domain
CDDcd040492.14E-58490613No hitNo description
SMARTSM002390.0011491592IPR000008C2 domain
PROSITE profilePS500048.592492577IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MADGGVEAVG GRSKRQNSLL RKQLALAVRS VQWNYAIFWS SSLTQPGVLE WGEGCYNGDM  60
KKRKKSYESH YKHGLQRSKQ LRKLYLSMLE GDSGTSVSTP HDEHTDHDDD HSCDSTSMML  120
SPDDLSDEEW YYLVSMSYVF SPSQCLPGRA SATGETIWLC NAQYAENKLF SRSLLARISE  180
DHSLLQHIKS CLLEISVHQN NDDEKKMGIM ISEANLMLEE KHQIPLEISD EDLHYKRTIS  240
TVLNYSMDRS STNDKTIHRR QPNLASSDSG SSFLRWKQCE QPNSDVVQKQ NDLQPQSQNV  300
LRKMLYNVPL MHTKRMSSPQ RPGMNQDDPS DRRKENEKFS VLRTMVPTVN EVDKESILNN  360
TIKYLQELEA RVEELESCMG SVNFVERQRK TTENLNDSVV IEETSGNYDD STKIDENSGE  420
TEQVTVFRDK THLRVKLKET EVVIEVRCSY RDYIVADIME TLSNLHMDAF SVRSHTLNKF  480
LTLNLKAKRG ILEVFLVDAH GITHTNFIGS PVYYVLLQCG TKEYRSKMSK GDNDNALWNQ  540
KFVFGFPMSQ WEKLTHIKFR IMDKELFKDG GFVGETMIHL GGIVTEGRDR VYMETKPAPY  600
NVVLDDDTFK GHLKIGLRFI ATDKSQRKAW EVKMEAKNRE EPISPILNLM KLPLLRFLLY  660
CFRKTNKYQL KEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wfj_A2e-1249061910128putative elicitor-responsive gene
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g056940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456281.10.0PREDICTED: transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A3P5Y3440.0A0A3P5Y344_BRACM; Uncharacterized protein
STRINGXP_010456281.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein