PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g056870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 383aa    MW: 43716.8 Da    PI: 9.0412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g056870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-144799148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmg...kgRtlkqcksrwqkyl 48
                     +g WT eEdell +av+++ g+  +Wk I + ++    +R++ qc++rw+k+l
   Csa13g056870.1 47 KGGWTSEEDELLTNAVQMYKGRhtSWKNIVELVPglkDKRSEVQCQHRWLKVL 99
                     688**********************************99***********986 PP
2Myb_DNA-binding47.15.4e-15105154148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed+ll ++vk + ++   +W++I++ +  gR +kqc++rw+++l
   Csa13g056870.1 105 KGHWTKDEDDLLSKLVKDHMKNdrpQWSKISKQLS-GRIGKQCRERWHNHL 154
                      789********************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2984299IPR017930Myb domain
SuperFamilySSF466891.44E-1545114IPR009057Homeodomain-like
SMARTSM007171.8E-1146101IPR001005SANT/Myb domain
PfamPF002491.1E-124799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-1749111IPR009057Homeodomain-like
CDDcd001677.93E-85099No hitNo description
SuperFamilySSF466891.85E-1899169IPR009057Homeodomain-like
PROSITE profilePS5129424.942100158IPR017930Myb domain
SMARTSM007173.8E-15104156IPR001005SANT/Myb domain
PfamPF139211.9E-15108168No hitNo description
CDDcd001671.88E-11108154No hitNo description
Gene3DG3DSA:1.10.10.602.4E-22112191IPR009057Homeodomain-like
PROSITE profilePS500905.331155191IPR017877Myb-like domain
SMARTSM007172159196IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTTESNDLNR SESESDISAA TQVTPTLAID FSLGCKRVSG PTRRSTKGGW TSEEDELLTN  60
AVQMYKGRHT SWKNIVELVP GLKDKRSEVQ CQHRWLKVLD PNLYKGHWTK DEDDLLSKLV  120
KDHMKNDRPQ WSKISKQLSG RIGKQCRERW HNHLNPTIIK TAWTREEELI LVQSQREHSN  180
KTENNIKNHW NCSVKKRLEQ FPSNLSSGSR PSCFEYNFFN QKTLQIEEAA VKSPLKDSLE  240
LTLGPTNWRS TPSSTSSLRG DESISSSVES DWSSLNVSES TQETPQSSND NECIQEVKEI  300
KKRLRMAAST FNTPSIISKR SSPALKRHRQ NELNTPFQID GGSHMSSEEE HSTSPFSKYR  360
LAKRNTCSGS KPLERRLDFD FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-38501989159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-38501989159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g056870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427153.10.0PREDICTED: myb-related protein B-like isoform X1
SwissprotQ9SPN31e-161MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLR0FHY70.0R0FHY7_9BRAS; Uncharacterized protein
STRINGXP_010427153.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-153myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]