PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g056100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 298aa    MW: 33497.8 Da    PI: 7.1827
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g056100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.5e-3765123260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk
  Csa13g056100.1  65 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 123
                     67899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2764119IPR003851Zinc finger, Dof-type
PfamPF027018.3E-3367123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44469123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDHHQYHHHD HDQYQHQMTI TNNLPYNTIV TTQPPPPTTT MDSTSATTMI MDDEKKLMTT  60
MSTRPQEPRN CPRCNSSNTK FCYYNNYSLA QPRYLCKSCR RYWTEGGSLR NVPVGGGSRK  120
NKKLPLLLPN SSTSSSTKNL PDLNPPFVFT SSPSNPSTTH DDNNEHSLSF STPMQDKRAQ  180
GAYGHFTEQV VTGGQDGLFQ APMGMIQFRQ EYDHDHQKKN LGFSLDRNEE GIGNHDNFVV  240
NGGGNKMIYP YGGYEDQHNH HHQHVRHDDG NKKREGGSSN ELWSGIILGG DSGGPTW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g056100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614910.0AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankTM018A100.0AF013294.1 Arabidopsis thaliana BAC TM018A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456185.10.0PREDICTED: dof zinc finger protein DOF4.1-like
SwissprotQ9M1611e-152DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLR0HC391e-171R0HC39_9BRAS; Uncharacterized protein
STRINGXP_010456185.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-130Dof family protein