PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g055730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 438aa    MW: 49697.3 Da    PI: 7.972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g055730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.68.5e-3961363128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                     +G+rF+Pt eel+++yLk+k+ gk+  ++e+i+e++ +++ P+ Lp  +k+++++ ewyfFs+ + ++++ ++  +r+t  gyWk tgkd+++++
  Csa13g055730.1   6 VGYRFSPTGEELINHYLKNKILGKTWLVDEAISEINFLSYIPKLLPrlAKIQSDNLEWYFFSRIEYTNPKkKNAMKRSTGCGYWKPTGKDRKIKD 100
                     7************************999999***************5448877777********9999972556778****************** PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k  +g ++glkktL++y+g+ p+g++t Wvmhey++
  Csa13g055730.1 101 KrgNGVEIGLKKTLMYYEGKVPNGVRTPWVMHEYHI 136
                     9777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.8314154IPR003441NAC domain
SuperFamilySSF1019411.83E-425154IPR003441NAC domain
PfamPF023652.7E-236136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLKDLVGYRF SPTGEELINH YLKNKILGKT WLVDEAISEI NFLSYIPKLL PRLAKIQSDN  60
LEWYFFSRIE YTNPKKKNAM KRSTGCGYWK PTGKDRKIKD KRGNGVEIGL KKTLMYYEGK  120
VPNGVRTPWV MHEYHITCLP QDQRNYVICK VKYKGEVGDI PFGGNYSSEP SQSMVSDSNS  180
VRAAVNRAPK FEQPGQENIF GMSVDDLKSP TNKQEDLSLW DVLHPDMLFS DNNNPTLLPH  240
LAPNDDEFLG GLRHINREQV EYLFANEEFI STPTTYMQEN RNDHRPKKPL SGIIPEYSCD  300
TDSDAESISA TSYQGTSSPG GESVGSSNSH SQTGLDEMIS LSKDLQTSHE PSISRKTRES  360
QLKQEMKQDT SRASGASIDK KSYMVKTEKT GWFITEEAME RNWKTPRYIY LVRMIIGFIL  420
LLALIGNIIS VLRAKSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-22713618140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g055730.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456147.10.0PREDICTED: NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLR0GRZ70.0R0GRZ7_9BRAS; Uncharacterized protein
STRINGXP_010456147.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]