PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g054600.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 923aa MW: 102530 Da PI: 8.7642

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g054600.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.1	1.9e-05	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ + L+++F+ + +s+++ +e+++ g+t +qV+ +F ++++ +k Csa13g054600.1 66 KRPRDLLNPKAAKYLQAVFAVKDAISKRDSREISALFGITVAQVRDFFVTQKTRVRK 122 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	63	123	IPR001356	Homeobox domain
SMART	SM00389	6.9E-4	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-5	66	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-4	66	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	2.6E-5	228	322	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	7.32E-6	231	324	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MDAFKDEIEI GSSVESLMEL LDSQKELFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL 60 SIKIGKRPRD LLNPKAAKYL QAVFAVKDAI SKRDSREISA LFGITVAQVR DFFVTQKTRV 120 RKQVRLSREK LILSNSDALQ GDGVPENNNT RNHVDPVPLN SVHPEACSIS WGEGETVALM 180 PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDSSVLI WFLSKGGVLI 240 LTTWLSQAAA EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK 300 GLLSRWTKLF AKIQAMKKQN RNNSQIDSQS QLLLKQSIAE IMGDTSNPED ILSLTNGRSE 360 NVRRFESSQG PKLLLTSADD STKKHMLGST PSYNKERRKV QMVEQPGQKA AGKSPQTVRI 420 GTSIRSRPMS ADDIQKAKMR ALYMQSKNSK KDALPSAIGD SKTIVPEKPL ALQSSKDFPP 480 SQNSEAKTED TNVPSAIQPV DGPAIIVPIQ TDEIKKPFLT PSKSISNKVG ILVKMSPQTI 540 LKNCKRIQID WHVPPGMELD EAWRVAAGGN SKEADVQRNR NRRERETTYQ SLQTIPLNPK 600 EPWDREMDYD DGLTPEIPSQ QSPEESSTEP QESLDERRTA AGAATTSSSL SCPEPDLELL 660 AALLKNPDLV YALTSGKPSN LGGQDMVKLL DVIKTGAPTS SSSSNKQVEE KVEVSLPSPT 720 PATNPGMSGW GQEAIRNPFS RQNQVGAAVA RSGTHLHVTS MQWQSTNEQA IPRHATAAYN 780 NSLILSHTER QQQQQQQMQP QLHHNHHLHQ QPISTTSYAV REPVGQIGTA TSSGSWRSQQ 840 SQNSYYSHQG NDIALASQAS SYQGNNQYMS SNREYESWSP DHSPSRNHPN VRGQQQQQQQ 900 QQPSRKYDSS SHPYWNQNKR WR*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MDAFKDEIEI GSSVESLMEL LDSQKELFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL  60
SIKIGKRPRD LLNPKAAKYL QAVFAVKDAI SKRDSREISA LFGITVAQVR DFFVTQKTRV  120
RKQVRLSREK LILSNSDALQ GDGVPENNNT RNHVDPVPLN SVHPEACSIS WGEGETVALM  180
PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDSSVLI WFLSKGGVLI  240
LTTWLSQAAA EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK  300
GLLSRWTKLF AKIQAMKKQN RNNSQIDSQS QLLLKQSIAE IMGDTSNPED ILSLTNGRSE  360
NVRRFESSQG PKLLLTSADD STKKHMLGST PSYNKERRKV QMVEQPGQKA AGKSPQTVRI  420
GTSIRSRPMS ADDIQKAKMR ALYMQSKNSK KDALPSAIGD SKTIVPEKPL ALQSSKDFPP  480
SQNSEAKTED TNVPSAIQPV DGPAIIVPIQ TDEIKKPFLT PSKSISNKVG ILVKMSPQTI  540
LKNCKRIQID WHVPPGMELD EAWRVAAGGN SKEADVQRNR NRRERETTYQ SLQTIPLNPK  600
EPWDREMDYD DGLTPEIPSQ QSPEESSTEP QESLDERRTA AGAATTSSSL SCPEPDLELL  660
AALLKNPDLV YALTSGKPSN LGGQDMVKLL DVIKTGAPTS SSSSNKQVEE KVEVSLPSPT  720
PATNPGMSGW GQEAIRNPFS RQNQVGAAVA RSGTHLHVTS MQWQSTNEQA IPRHATAAYN  780
NSLILSHTER QQQQQQQMQP QLHHNHHLHQ QPISTTSYAV REPVGQIGTA TSSGSWRSQQ  840
SQNSYYSHQG NDIALASQAS SYQGNNQYMS SNREYESWSP DHSPSRNHPN VRGQQQQQQQ  900
QQPSRKYDSS SHPYWNQNKR WR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g054600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456015.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	D7M3G5	0.0	D7M3G5_ARALL; Uncharacterized protein
STRING	XP_010456015.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]