PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g052170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 532aa    MW: 58186.5 Da    PI: 7.0563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g052170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30295353259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  Csa13g052170.1 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVnGCPVRKQVQRCAEDRTILITTYEGNHNHP 353
                     7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-34279355IPR003657WRKY domain
SuperFamilySSF1182907.19E-28287355IPR003657WRKY domain
PROSITE profilePS5081129.769289355IPR003657WRKY domain
SMARTSM007741.4E-36294354IPR003657WRKY domain
PfamPF031061.8E-26296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MFRFPVSLGG GPRDNTTQSD EQHHHRAVVD EVDFFRSAEK RDRVTRDEQN IIAADETHKV  60
HVKREINSSV ADREDRSTDH INIGLNLLTA NTGSDESMVD DGLSVDMEEK RTKCENVQLR  120
EELKKASEDN QRLKEMLSQT TNNFNSLQMQ LVAVMRQQED HHHLATTENK DNAKNRHEVP  180
EMVPRQFIDL GPPSDEVSSE ERTMVRAGSP QSLLEKSSSR QNGKRVLVRE ESPETESNGW  240
RNPNKVPKHH GSSSNCGGNG SGNGNNNVIQ QSAAEATMRK ARVSVRARSE APMLSDGCQW  300
RKYGQKMAKG NPCPRAYYRC TMVNGCPVRK QVQRCAEDRT ILITTYEGNH NHPLPPAAMS  360
MASTTTAAAS MLLSGSTMSS QDGLMNPTNL LARTILPCSS SMATISASAP FPTITLDLTD  420
SSNGNNLTNN PLMQFSQRSG FAELNQSVLP QMMGQALYYN QQSKFSGLHM PSQPLNAGEN  480
VSAATAAIAS NPNFAAALAA AITSIINGSN NQQNGNNSSS NVTTSNVDTR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22281357176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g052170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526500.0AY052650.1 Arabidopsis thaliana WRKY transcription factor 42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455724.10.0PREDICTED: WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLR0FDY10.0R0FDY1_9BRAS; Uncharacterized protein
STRINGXP_010455724.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein