PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g050660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 237aa    MW: 27160.8 Da    PI: 6.3937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g050660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++     G ++W++ ++  g++R++k+c++rw +yl
   Csa13g050660.1 14 KGPWTVEEDKKLINFLLNNGHRCWRALPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding40.94.8e-1371111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++l +d +++ G+  W++Ia++++ gRt++++k++w+++
   Csa13g050660.1  71 SDAEEQLVIDIHALIGNI-WSKIAARLP-GRTDNEIKNYWNTH 111
                      778*************99.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.082961IPR017930Myb domain
SMARTSM007172.3E-111363IPR001005SANT/Myb domain
SuperFamilySSF466894.69E-2413108IPR009057Homeodomain-like
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001676.12E-81661No hitNo description
PROSITE profilePS5129422.54562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2263116IPR009057Homeodomain-like
SMARTSM007176.9E-1266114IPR001005SANT/Myb domain
PfamPF002491.0E-1171111IPR001005SANT/Myb domain
CDDcd001672.46E-871112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRQPCCDKL LVKKGPWTVE EDKKLINFLL NNGHRCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEQLVID IHALIGNIWS KIAARLPGRT DNEIKNYWNT HIKKKLLKME  120
IDESSTITHQ NSSKDDYELL GDIIHNDEDL FNILWTNDEP PLVGPSWSNN NVGVVGTVGD  180
KNNIVAGEDL PTWPLEEKNG DSWMFLDYCQ NFGVQDFRFD CYHGFGQSFM ETGHKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g050660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759991e-158AF175999.1 Arabidopsis thaliana putative transcription factor (MYB42) mRNA, complete cds.
GenBankAY5196051e-158AY519605.1 Arabidopsis thaliana MYB transcription factor (At4g12350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456892.11e-176PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-72ODO1_PETHY; Protein ODORANT1
TrEMBLA0A1J3HXS91e-139A0A1J3HXS9_NOCCA; Protein ODORANT1
STRINGXP_010456892.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-126myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]