PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g048300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 302aa    MW: 32578.3 Da    PI: 4.6105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g048300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-1992141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdps    r  r++lg+f taeeAa  +++a+ +l+g
  Csa13g048300.1  92 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTFNTAEEAAVVYDNAAIQLRG 141
                     89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-3191149IPR001471AP2/ERF domain
PROSITE profilePS5103223.99992149IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2292149IPR016177DNA-binding domain
SMARTSM003802.0E-3892155IPR001471AP2/ERF domain
CDDcd000182.02E-3192148No hitNo description
PfamPF008477.7E-1292141IPR001471AP2/ERF domain
PRINTSPR003672.5E-1093104IPR001471AP2/ERF domain
PRINTSPR003672.5E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
METEKKLKNI VTQPRILRIS VTDPYATDSS SDEDEEQGFQ AKRRRVKKYV NEVVLESASS  60
DDKDKLMTTK KKRKRTVATA TPAVVVTPAA RKFRGVRQRP WGKWAAEIRD PSRRVRVWLG  120
TFNTAEEAAV VYDNAAIQLR GPDALLNFPP PPPVPVMENT EEASTVAEET SGSISGDGGE  180
CLDSPVSVLR SPFSGESTAV KKEFSGVSAT VGVKEEPSGA LFTDLSESLF SNDDVFGFPM  240
SMTDCYGGDL FGGDLFADMS FGFGFGSGSG YGSGSGFSSW HVEDHFQDIG DLFGSDPLLA  300
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2291149160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14145KRRRV
27075KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g048300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455519.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotO825031e-115CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLR0FFZ11e-115R0FFZ1_9BRAS; Uncharacterized protein
STRINGXP_010455519.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-92cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]