PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g048200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 314aa    MW: 35426.5 Da    PI: 6.4182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g048200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.27.2e-28136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqK++ g+++prsYYrCt++    C+++k+v+rs+ dp+++e+tY+g+H+++
  Csa13g048200.1 136 DDVYSWRKYGQKDILGAKYPRSYYRCTFRntqCCWATKQVQRSDGDPTIFEVTYRGTHTCS 196
                     8**************************99776799************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.425130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-27131197IPR003657WRKY domain
SuperFamilySSF1182902.88E-24134197IPR003657WRKY domain
SMARTSM007743.0E-37135197IPR003657WRKY domain
PfamPF031067.5E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEMMNWEQRN LLNELIHGLR AAKQLQASPS PSSSSSSSCL TYEMKETLLQ KVVSSYEKAI  60
MMLNGSRNPT TERVMDPVVN SGKVPESPAS INESPKSEEF LDVGCKDYSC KKRKMLPKWT  120
EQVRISPERG LEGPHDDVYS WRKYGQKDIL GAKYPRSYYR CTFRNTQCCW ATKQVQRSDG  180
DPTIFEVTYR GTHTCSQQGN TTPHKRAETK QNQNHIEEVV NYQNNLLDNL RTNLTIRTDG  240
VEGHGFSFPV TPPPFYSYET FCHVGSSGPS DFTGLISTNT STGSSPIFDV DFHFDPTAEI  300
DTTDFPTFLH DSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-171371931874Disease resistance protein RRS1
5w3x_D1e-171371931874Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g048200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423961e-107AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336861e-107AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011071e-107BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455506.10.0PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-148WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW301e-173R0GW30_9BRAS; Uncharacterized protein
STRINGXP_010455506.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-142WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]