PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g043330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 275aa    MW: 30823 Da    PI: 8.9954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g043330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-1853100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
   Csa13g043330.1  53 KGAWTKEEDQRLIDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 100
                      79******************************99************97 PP
2Myb_DNA-binding55.71.2e-17106150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +Ed+++++++ +lG++ W++Ia +++ gRt++++k++w+++
   Csa13g043330.1 106 RGNFTDDEDQIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 150
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-2444103IPR009057Homeodomain-like
PROSITE profilePS5129416.92548100IPR017930Myb domain
SuperFamilySSF466895.75E-2952147IPR009057Homeodomain-like
SMARTSM007172.7E-1352102IPR001005SANT/Myb domain
PfamPF002493.3E-1653100IPR001005SANT/Myb domain
CDDcd001673.89E-1155100No hitNo description
PROSITE profilePS5129428.211101155IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27104155IPR009057Homeodomain-like
SMARTSM007171.1E-16105153IPR001005SANT/Myb domain
PfamPF002498.5E-16106150IPR001005SANT/Myb domain
CDDcd001673.64E-12108151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MYQTWSKSPP FFFILPKTLH IFLISLSLSS LNNIFIPFTM GRSPCCEKAH TNKGAWTKEE  60
DQRLIDYIRN HGEGCWRSLP KSAGLLRCGK SCRLRWINYL RPDLKRGNFT DDEDQIIIKL  120
HSLLGNKWSL IAGRLPGRTD NEIKNYWNTH IKRKLLSHGI DPQTHRPIND TKAVPSQIVV  180
VGPNQNDAVE YSLSNLAVKQ ENSSGASTSG TTTDEDLRQN GECYYSGDNS ERIELNLDLT  240
LGFGSGSGRV VGAGLLADSK PWRDQLMAAR LSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-305215526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g043330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0868130.0AY086813.1 Arabidopsis thaliana clone 28019 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455338.21e-175PREDICTED: transcription repressor MYB6-like
SwissprotQ388511e-147MYB6_ARATH; Transcription repressor MYB6
TrEMBLR0HCS41e-158R0HCS4_9BRAS; Uncharacterized protein
STRINGXP_010455338.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-140myb domain protein 6