PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g041910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 235aa MW: 26878.9 Da PI: 5.1603 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.1 | 9e-21 | 79 | 161 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l Csa13g041910.1 79 YQKYGGSHGFDVRKQRRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEQNHNHDLL 161 9************9986665..7779**************98777...999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-17 | 78 | 161 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEQNHNHDL LTLCANEDAI QLLRKLEEKK 180 KELVKANAWM PQSSDVGLVE EEEEVEDKEV PNARGIKRKA SIGRPKNQKV GPHG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g041910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456530.1 | 1e-108 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | R0EZH3 | 4e-60 | R0EZH3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010456530.1 | 1e-108 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-17 | FAR1 family protein |