PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g040290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15274.6 Da PI: 10.5768 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr+r++lg++ ta Aa+a++ a +l+g Csa13g040290.1 23 PYKGIRMRK-WGKWVAEIREP---NKRTRIWLGSYKTAVAAARAYDTAVFYLRG 72 6******99.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.01 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-37 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-27 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 5.2E-11 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVKEGLVMKE KPKRNPMSPK EKPYKGIRMR KWGKWVAEIR EPNKRTRIWL GSYKTAVAAA 60 RAYDTAVFYL RGPSARLNFP EHVFQDRNGG EGVGGDMSAT LIRQKAAEVG ARVDAELRSE 120 NTKVENMDCN FTVW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 20 | 91 | 2 | 70 | ATERF1 |
3gcc_A | 1e-16 | 20 | 91 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g040290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455223.1 | 5e-96 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | Q8W3M3 | 4e-69 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | D7M7M2 | 2e-69 | D7M7M2_ARALL; Uncharacterized protein | ||||
STRING | XP_010455223.1 | 2e-95 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 2e-60 | related to AP2 9 |
Publications ? help Back to Top | |||
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