PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g040290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 135aa    MW: 15274.6 Da    PI: 10.5768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g040290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr+r++lg++ ta  Aa+a++ a  +l+g
  Csa13g040290.1 23 PYKGIRMRK-WGKWVAEIREP---NKRTRIWLGSYKTAVAAARAYDTAVFYLRG 72
                    6******99.**********9...337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.012380IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-212381IPR016177DNA-binding domain
SMARTSM003805.9E-372386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-302481IPR001471AP2/ERF domain
CDDcd000181.30E-272482No hitNo description
PfamPF008475.2E-112472IPR001471AP2/ERF domain
PRINTSPR003671.9E-112435IPR001471AP2/ERF domain
PRINTSPR003671.9E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVKEGLVMKE KPKRNPMSPK EKPYKGIRMR KWGKWVAEIR EPNKRTRIWL GSYKTAVAAA  60
RAYDTAVFYL RGPSARLNFP EHVFQDRNGG EGVGGDMSAT LIRQKAAEVG ARVDAELRSE  120
NTKVENMDCN FTVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162091270ATERF1
3gcc_A1e-162091270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g040290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455223.15e-96PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ8W3M34e-69RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLD7M7M22e-69D7M7M2_ARALL; Uncharacterized protein
STRINGXP_010455223.12e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.12e-60related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]