PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g037700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19743 Da    PI: 4.5554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g037700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.16.2e-102362443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L +a++av + s++
  Csa13g037700.1 23 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 62
                    67899********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.9371262IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-81871IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-131896IPR002100Transcription factor, MADS-box
CDDcd002663.04E-171894No hitNo description
PfamPF003194.5E-92365IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MCTIWFELVL EDSDGGEEVE KRETKQQRAV ACSKRRQTVF SKAADLCHLS GANIAVFVTS  60
PSEISDVVYS FSGYSPAHEI ADCYLNRKPP PKIEVKSQSK LGFWWEDPDL YNSCDDLSEL  120
NILEDHIERV KKHVMACLEK KEKLQSVSNT EQNPSTCSLD EDCDRGFDLN SSPST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g037700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090030.11e-114PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN47e-82R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010455155.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.13e-82AGAMOUS-like 39