PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g034960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 290aa MW: 32850.2 Da PI: 8.3601 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.4 | 1.6e-17 | 31 | 78 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ s++++ + R ++++KKA+ELS+LCd+ev+vi++ +g+l ++++ Csa13g034960.1 31 SSVSKKTTNLPLREQTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 78 677889999999*****************************9746887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-6 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.54 | 30 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-14 | 33 | 103 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.94E-18 | 34 | 105 | No hit | No description |
Pfam | PF00319 | 3.4E-12 | 43 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MASSSMLTKD KTTKLFSVRN RRCFKKQTSL SSVSKKTTNL PLREQTMFKK ASELSILCDV 60 EVCVIYYNRD GELVRTWPED QSKVRDMAER FSKLDDRERR KKSTDLSLFL NKKTLKDKKT 120 SFDITDNKCS EKVLEMEASL ESSLRVLQDK LLRLQNQTEP DQNHVVSSVG FFTTDPSLMS 180 GVSKTEQDLS TPSLTQQQQS KVSVFLYNHD NDSLCQLPNS ISTFDPSMST ASLGAQGLCL 240 RSNESDLLMV FPPQMQTQTP PPVHFDRFAG WNNQTPSSFA DPMIFSSYN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g034960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455071.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9H9 | 2e-96 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0H119 | 1e-127 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010455071.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26950.1 | 1e-88 | AGAMOUS-like 93 |
Publications ? help Back to Top | |||
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