PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g034950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 130aa    MW: 15075.4 Da    PI: 10.3969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g034950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.11.1e-183178450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++ s++ + +s R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa13g034950.1 31 SSVSKKITNLSLREQTMFKKASELSILCDIEVCVIYYDRDGELvKTWP 78
                    677888999********************************9747887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-72379IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.6523073IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-1533103IPR002100Transcription factor, MADS-box
CDDcd002668.93E-1834105No hitNo description
PfamPF003191.2E-123674IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MASSSMLTKD KTTKLLSVRN QRCFKKQTSL SSVSKKITNL SLREQTMFKK ASELSILCDI  60
EVCVIYYDRD GELVKTWPED QSKVRDMAER FSKLNDRERC KKSSNLSLFL NRKTLKDKKT  120
SFDNKDNKF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g034950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455071.11e-74PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9N23e-46AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1192e-59R0H119_9BRAS; Uncharacterized protein
STRINGXP_010455071.15e-74(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.11e-54AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]