PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g034660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32078 Da PI: 9.5146 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58 | 1.2e-18 | 3 | 42 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien++ r+ tf kR+ g+lKKA+EL +LCd+ ++vi+ s Csa13g034660.1 3 FIENETARKSTFKKRKRGVLKKAHELATLCDIPICVIVNS 42 8************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-16 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.54 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.34E-22 | 1 | 78 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-21 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-17 | 3 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAFIENETAR KSTFKKRKRG VLKKAHELAT LCDIPICVIV NSAYESNPEM WPSREAADKV 60 VSQWRMMSVM DQTKRMVNQE SFLQQRITKA TESWRKARRE NKELEMKNIM FDCLSGKTLV 120 SRLPKCDLRD FGSVIEQHLK DVNRRMEILK RNDDESSSSL VPIDAATTSS AMPMIEMGSS 180 SSSGMPMIEM GSSSVEFHEK IRDQSQNTLN MKNTNKDLDM NKKQCVMPMI EMGSSSSSVM 240 HMIEMGSSSV GFHDKIRDQI QKTLNMKNTN KDLDLNKKQW * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g034660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830690 | 1e-179 | AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455018.1 | 1e-157 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_010455019.1 | 1e-157 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6B3Z0 | 1e-115 | S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35 | ||||
STRING | XP_010455018.1 | 1e-156 | (Camelina sativa) | ||||
STRING | XP_010455019.1 | 1e-156 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 4e-98 | M-type_MADS family protein |