PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g034650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 118aa MW: 13233 Da PI: 8.2223 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.1 | 7.2e-11 | 2 | 34 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47 kR++gi KK +EL +LC+++++ +i+s+ + + Csa13g034650.1 2 KRKKGITKKLHELKTLCGVQACGVIYSPYQSVP 34 9**************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.068 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-11 | 2 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-10 | 2 | 31 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MKRKKGITKK LHELKTLCGV QACGVIYSPY QSVPEVWPSK EDLNDNQYLN HENSFNDMML 60 AQNVGYAGGH ARIPFIDHYN YHQQPTVDLA ITNHMPSITS STTSITSVYA SYINKNL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g034650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493922.1 | 9e-32 | PREDICTED: agamous-like MADS-box protein AGL36 | ||||
TrEMBL | R0H400 | 5e-27 | R0H400_9BRAS; Uncharacterized protein | ||||
STRING | XP_010456732.1 | 5e-48 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 1e-18 | AGAMOUS-like 38 |