PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g034640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26751.8 Da PI: 10.0677 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.4 | 8.8e-19 | 10 | 49 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien++ r+ tf kR+ g+lKKA+EL +LCd+ ++vi+ s Csa13g034640.1 10 FIENETARKSTFKKRKRGVLKKAHELATLCDIPICVIVNS 49 8************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.007 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.12E-25 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-17 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTRKKVNMAF IENETARKST FKKRKRGVLK KAHELATLCD IPICVIVNSA YESNPEMWPS 60 REAADKVVSQ WRMMSVMDQT KRMVNQESFL QQRITKATES WRKARRENKE LEMKNIMFDC 120 LSGKTLVSRL PKCDLRDFGS VIEQHLKDVN RRMEILKRND DESSSSLVPI DAATTSSAMP 180 MIEMGSSSSS GMPMIEMGSS SVEFHEKIRD QSQNTLNMKN TNKDLDMNKK QW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNMAFIENETARKSTFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g034640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830690 | 0.0 | AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455018.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_010455019.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6B3Z0 | 1e-121 | S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35 | ||||
STRING | XP_010455018.1 | 1e-172 | (Camelina sativa) | ||||
STRING | XP_010455019.1 | 1e-172 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 1e-104 | M-type_MADS family protein |