PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g033740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 374aa    MW: 41049.4 Da    PI: 5.6578
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g033740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17263297135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Csa13g033740.1 263 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 297
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.635257293IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-18257307IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-16259321No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14261295IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-14262309No hitNo description
PROSITE patternPS003440263288IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15263297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
FKLTFSPHSP LSSLSPKTSS DERLPEKNKN NSLSLIHETL MEDEAHDFFH AADHFAVDDL  60
LVDFSNDDDE ENDVVADSTT TTTTAFTDSS NISAIDLPNF SGDVQDGTSF SGDLCVPCDD  120
LADELAWLSN IVDESFSPED VQKLQLISGF NTRPSPKSES GCSENPNSTS PIFTTDVSVP  180
AKARSKRSRA AACNWASRGL LMETVYDNPF TGETILSSHN LSPPTSPPPP MAHLAKKQAT  240
DGGYRRKKDV SSPESGGAEE RRCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE  300
YRPAASPTFV LTKHSNSHRK VMELRRQKEM SKGHHEFIHH HHGTDSAMIF DVSSEGDDYL  360
INHKVGPDFR QLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g033740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454925.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697810.0GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A178UTT90.0A0A178UTT9_ARATH; GATA transcription factor
STRINGXP_010454925.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-161GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]